RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 CHRNA1P02708 482 aa14□□□□□ -0.17
SHMT2-214ENST00000554604 KRT76Q01546 638 aa14□□□□□ -0.17
SHMT2-214ENST00000554604 FAM26DQ5JW98 314 aa14□□□□□ -0.17
SHMT2-214ENST00000554604 ATL3Q6DD88 541 aa14□□□□□ -0.17
SHMT2-214ENST00000554604 SWSAP1Q6NVH7 229 aa14□□□□□ -0.17
SHMT2-214ENST00000554604 LRSAM1Q6UWE0 723 aa14□□□□□ -0.17
SHMT2-214ENST00000554604 FERMT3Q86UX7 667 aa14□□□□□ -0.17
SHMT2-214ENST00000554604 CCDC60Q8IWA6 550 aaPredicted RBP14□□□□□ -0.17
SHMT2-214ENST00000554604 PHF6Q8IWS0 365 aaKnown RBP eCLIP14□□□□□ -0.17
SHMT2-214ENST00000554604 SMAP1Q8IYB5 467 aaPredicted RBP14□□□□□ -0.17
SHMT2-214ENST00000554604 MYOCDQ8IZQ8 938 aa14□□□□□ -0.17
SHMT2-214ENST00000554604 TRAPPC12Q8WVT3 735 aa14□□□□□ -0.17
SHMT2-214ENST00000554604 PPM1EQ8WY54 764 aa14□□□□□ -0.17
SHMT2-214ENST00000554604 APBB2Q92870 758 aa14□□□□□ -0.17
SHMT2-214ENST00000554604 RAD9AQ99638 391 aa14□□□□□ -0.17
SHMT2-214ENST00000554604 IFIH1Q9BYX4 1025 aaKnown RBP14□□□□□ -0.17
SHMT2-214ENST00000554604 CERS4Q9HA82 394 aa14□□□□□ -0.17
SHMT2-214ENST00000554604 STK36Q9NRP7 1315 aa13.99□□□□□ -0.17
SHMT2-214ENST00000554604 IGKV6D-21A0A0A0MT36 114 aa13.99□□□□□ -0.17
SHMT2-214ENST00000554604 HBP1O60381 514 aa13.99□□□□□ -0.17
SHMT2-214ENST00000554604 GAS7O60861 476 aa13.99□□□□□ -0.17
SHMT2-214ENST00000554604 PSAPP07602 524 aa13.99□□□□□ -0.17
SHMT2-214ENST00000554604 GHRP10912 638 aa13.99□□□□□ -0.17
SHMT2-214ENST00000554604 FDPSP14324 419 aaKnown RBP13.99□□□□□ -0.17
SHMT2-214ENST00000554604 MRPS6P82932 125 aaKnown RBP13.99□□□□□ -0.17
SHMT2-214ENST00000554604 TAP1Q03518 808 aa13.99□□□□□ -0.17
SHMT2-214ENST00000554604 IER5Q5VY09 327 aa13.99□□□□□ -0.17
SHMT2-214ENST00000554604 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.99□□□□□ -0.174e-7■□□□□ 9.3
SHMT2-214ENST00000554604 TRMT1LQ7Z2T5 733 aaKnown RBP13.99□□□□□ -0.17
SHMT2-214ENST00000554604 DAGLBQ8NCG7 672 aa13.99□□□□□ -0.17
SHMT2-214ENST00000554604 ATP8B4Q8TF62 1192 aa13.99□□□□□ -0.17
SHMT2-214ENST00000554604 ARNTL2Q8WYA1 636 aa13.99□□□□□ -0.17
SHMT2-214ENST00000554604 WASF1Q92558 559 aa13.99□□□□□ -0.17
SHMT2-214ENST00000554604 ZBTB10Q96DT7 871 aa13.99□□□□□ -0.17
SHMT2-214ENST00000554604 KCNJ14Q9UNX9 436 aa13.99□□□□□ -0.17
SHMT2-214ENST00000554604 PCDHA10Q9Y5I2 948 aa13.99□□□□□ -0.17
SHMT2-214ENST00000554604 CDY2AQ9Y6F7 541 aa13.99□□□□□ -0.17
SHMT2-214ENST00000554604 CCDC194A0A1B0GVG4 234 aa13.98□□□□□ -0.17
SHMT2-214ENST00000554604 WDR64B1ANS9 1081 aa13.98□□□□□ -0.17
SHMT2-214ENST00000554604 MSH4O15457 936 aa13.98□□□□□ -0.17
SHMT2-214ENST00000554604 LETM1O95202 739 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-214ENST00000554604 ADGRE1Q14246 886 aa13.98□□□□□ -0.17
SHMT2-214ENST00000554604 NONOQ15233 471 aaKnown RBP eCLIP13.98□□□□□ -0.17
SHMT2-214ENST00000554604 CCDC183Q5T5S1 534 aa13.98□□□□□ -0.17
SHMT2-214ENST00000554604 LRCH2Q5VUJ6 765 aa13.98□□□□□ -0.17
SHMT2-214ENST00000554604 KRT25Q7Z3Z0 450 aa13.98□□□□□ -0.17
SHMT2-214ENST00000554604 LENG9Q96B70 501 aa13.98□□□□□ -0.17
SHMT2-214ENST00000554604 OSBPL7Q9BZF2 842 aa13.98□□□□□ -0.17
SHMT2-214ENST00000554604 ORC3Q9UBD5 711 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-214ENST00000554604 INSL6Q9Y581 213 aa13.98□□□□□ -0.17
SHMT2-214ENST00000554604 PCDHA2Q9Y5H9 948 aa13.98□□□□□ -0.17
SHMT2-214ENST00000554604 TTC3P53804 2025 aa13.98□□□□□ -0.17
SHMT2-214ENST00000554604 COL1A2P08123 1366 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 NLRC5Q86WI3 1866 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 LCHNA4D1U4 455 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 CHMP2AO43633 222 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 GTPBP6O43824 516 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-214ENST00000554604 UPP2O95045 317 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 KLRC1P26715 233 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 TMEM62Q0P6H9 643 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 LPIN1Q14693 890 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 CCDC85BQ15834 202 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-214ENST00000554604 ZNF484Q5JVG2 852 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 MTHFD1LQ6UB35 978 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 MICALL1Q8N3F8 863 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 BBXQ8WY36 941 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-214ENST00000554604 RIT2Q99578 217 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 PHF20Q9BVI0 1012 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 TEKT3Q9BXF9 490 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 DISC1Q9NRI5 854 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 GABBR1Q9UBS5 961 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 CFAP45Q9UL16 551 aa13.97□□□□□ -0.17
SHMT2-214ENST00000554604 NCOR1O75376 2440 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 SMIM35A0A1B0GVV1 85 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 M0R2N6 131 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 RFXAPO00287 272 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 ARHGEF15O94989 841 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 TDP2O95551 362 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 MGAT3Q09327 533 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 NPY5RQ15761 445 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 INF2Q27J81 1249 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 Q4G0T1 1027 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 FBXO47Q5MNV8 452 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 TSHZ1Q6ZSZ6 1077 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 NME8Q8N427 588 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 USP38Q8NB14 1042 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 LEO1Q8WVC0 666 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-214ENST00000554604 SLC5A5Q92911 643 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 FAM167AQ96KS9 214 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 SPATA32Q96LK8 384 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 ZNF396Q96N95 335 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-214ENST00000554604 YME1L1Q96TA2 773 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 GJB4Q9NTQ9 266 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 DDX25Q9UHL0 483 aaKnown RBP13.96□□□□□ -0.17
SHMT2-214ENST00000554604 MTUS1Q9ULD2 1270 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 MAFBQ9Y5Q3 323 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-214ENST00000554604 TRPV2Q9Y5S1 764 aa13.96□□□□□ -0.17
SHMT2-214ENST00000554604 BRWD1Q9NSI6 2320 aa13.96□□□□□ -0.18
SHMT2-214ENST00000554604 COL4A4P53420 1690 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-214ENST00000554604 TTC28Q96AY4 2481 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms