RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 ATP2C1P98194 919 aaPredicted RBP15.82■□□□□ 0.12
PTCH1-226ENST00000553011 TARBP2Q15633 366 aaKnown RBP15.82■□□□□ 0.12
PTCH1-226ENST00000553011 TMEM266Q2M3C6 531 aa15.82■□□□□ 0.12
PTCH1-226ENST00000553011 TPH2Q8IWU9 490 aa15.82■□□□□ 0.12
PTCH1-226ENST00000553011 C4orf19Q8IY42 314 aa15.82■□□□□ 0.12
PTCH1-226ENST00000553011 NIFKQ9BYG3 293 aaKnown RBP15.82■□□□□ 0.12
PTCH1-226ENST00000553011 OSBPL7Q9BZF2 842 aa15.82■□□□□ 0.12
PTCH1-226ENST00000553011 FTOQ9C0B1 505 aaKnown RBP eCLIP15.82■□□□□ 0.12
PTCH1-226ENST00000553011 ZSWIM4Q9H7M6 989 aa15.82■□□□□ 0.12
PTCH1-226ENST00000553011 LAD1O00515 517 aa15.81■□□□□ 0.12
PTCH1-226ENST00000553011 ZBTB39O15060 712 aa15.81■□□□□ 0.12
PTCH1-226ENST00000553011 DKC1O60832 514 aaKnown RBP eCLIP15.81■□□□□ 0.12
PTCH1-226ENST00000553011 MED24O75448 989 aa15.81■□□□□ 0.12
PTCH1-226ENST00000553011 SPATA31C1P0DKV0 1188 aa15.81■□□□□ 0.12
PTCH1-226ENST00000553011 PRPHP41219 470 aa15.81■□□□□ 0.12
PTCH1-226ENST00000553011 CLCN3P51790 818 aa15.81■□□□□ 0.12
PTCH1-226ENST00000553011 NPEPPSP55786 919 aa15.81■□□□□ 0.12
PTCH1-226ENST00000553011 TMEM62Q0P6H9 643 aa15.81■□□□□ 0.12
PTCH1-226ENST00000553011 PTPRSQ13332 1948 aa15.81■□□□□ 0.12
PTCH1-226ENST00000553011 PKP1Q13835 747 aa15.81■□□□□ 0.12
PTCH1-226ENST00000553011 BECN1Q14457 450 aa15.81■□□□□ 0.12
PTCH1-226ENST00000553011 HABP4Q5JVS0 413 aaKnown RBP15.81■□□□□ 0.12
PTCH1-226ENST00000553011 PSRC1Q6PGN9 363 aaPredicted RBP15.81■□□□□ 0.12
PTCH1-226ENST00000553011 RPAINQ86UA6 219 aa15.81■□□□□ 0.12
PTCH1-226ENST00000553011 RSPH3Q86UC2 560 aa15.81■□□□□ 0.12
PTCH1-226ENST00000553011 RPUSD2Q8IZ73 545 aaKnown RBP15.81■□□□□ 0.12
PTCH1-226ENST00000553011 NEK9Q8TD19 979 aa15.81■□□□□ 0.12
PTCH1-226ENST00000553011 GBF1Q92538 1859 aa15.81■□□□□ 0.12
PTCH1-226ENST00000553011 CEP89Q96ST8 783 aa15.81■□□□□ 0.12
PTCH1-226ENST00000553011 MYO9BQ13459 2157 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 TCHHQ07283 1943 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 A0A087WWV3 80 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 A0A1W2PPC1 479 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 PP2D1A8MPX8 630 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 MAGEB2O15479 319 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 FGBP02675 491 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 CHRNA1P02708 482 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 YWHABP31946 246 aaKnown RBP15.8■□□□□ 0.12
PTCH1-226ENST00000553011 MRPS6P82932 125 aaKnown RBP15.8■□□□□ 0.12
PTCH1-226ENST00000553011 MGAT3Q09327 533 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 TBC1D8BQ0IIM8 1120 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 SF3A1Q15459 793 aaKnown RBP15.8■□□□□ 0.12
PTCH1-226ENST00000553011 FAM26DQ5JW98 314 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 DTHD1Q6ZMT9 781 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 OTOP2Q7RTS6 562 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 KIAA0319LQ8IZA0 1049 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 LRRC71Q8N4P6 559 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 METTL13Q8N6R0 699 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 IGSF22Q8N9C0 903 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 ZNF579Q8NAF0 562 aaKnown RBP15.8■□□□□ 0.12
PTCH1-226ENST00000553011 ZSCAN16Q9H4T2 348 aaPredicted RBP15.8■□□□□ 0.12
PTCH1-226ENST00000553011 LRWD1Q9UFC0 647 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 CLIC4Q9Y696 253 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 CDY2AQ9Y6F7 541 aa15.8■□□□□ 0.12
PTCH1-226ENST00000553011 VWA3AA6NCI4 1184 aa15.79■□□□□ 0.12
PTCH1-226ENST00000553011 LYPLA2O95372 231 aa15.79■□□□□ 0.12
PTCH1-226ENST00000553011 PARNO95453 639 aaKnown RBP15.79■□□□□ 0.12
PTCH1-226ENST00000553011 CXCL10P02778 98 aa15.79■□□□□ 0.12
PTCH1-226ENST00000553011 ZSCAN22P10073 491 aaPredicted RBP15.79■□□□□ 0.12
PTCH1-226ENST00000553011 CDC25AP30304 524 aa15.79■□□□□ 0.12
PTCH1-226ENST00000553011 TCTN1Q2MV58 587 aa15.79■□□□□ 0.12
PTCH1-226ENST00000553011 EFCAB12Q6NXP0 572 aa15.79■□□□□ 0.12
PTCH1-226ENST00000553011 CATSPER3Q86XQ3 398 aa15.79■□□□□ 0.12
PTCH1-226ENST00000553011 LINC01465Q8N7H1 131 aa15.79■□□□□ 0.12
PTCH1-226ENST00000553011 ERMNQ8TAM6 284 aa15.79■□□□□ 0.12
PTCH1-226ENST00000553011 CEP170P1Q96L14 293 aa15.79■□□□□ 0.12
PTCH1-226ENST00000553011 RNPC3Q96LT9 517 aaKnown RBP15.79■□□□□ 0.12
PTCH1-226ENST00000553011 PPP1R16BQ96T49 567 aa15.79■□□□□ 0.12
PTCH1-226ENST00000553011 POLR3CQ9BUI4 534 aaPredicted RBP15.79■□□□□ 0.12
PTCH1-226ENST00000553011 SUGCTQ9HAC7 445 aa15.79■□□□□ 0.12
PTCH1-226ENST00000553011 TUFT1Q9NNX1 390 aa15.79■□□□□ 0.12
PTCH1-226ENST00000553011 CYP26B1Q9NR63 512 aa15.79■□□□□ 0.12
PTCH1-226ENST00000553011 BMP15O95972 392 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 F13A1P00488 732 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 VTNP04004 478 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 PFKMP08237 780 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 GHRP10912 638 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 RPA1P27694 616 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 CCT6AP40227 531 aaKnown RBP15.78■□□□□ 0.12
PTCH1-226ENST00000553011 CEBPZQ03701 1054 aaKnown RBP15.78■□□□□ 0.12
PTCH1-226ENST00000553011 MKRN4PQ13434 485 aaPredicted RBP15.78■□□□□ 0.12
PTCH1-226ENST00000553011 DRP2Q13474 957 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 PDIA5Q14554 519 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 XKR9Q5GH70 373 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 IER5Q5VY09 327 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 ARL6IP4Q66PJ3 421 aaKnown RBP15.78■□□□□ 0.12
PTCH1-226ENST00000553011 POTEGQ6S5H5 508 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 SNX29Q8TEQ0 813 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 PIGOQ8TEQ8 1089 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 HERVK_113Q902F9 699 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 USP28Q96RU2 1077 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 RAB34Q9BZG1 259 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 BMP2KQ9NSY1 1161 aaPredicted RBP15.78■□□□□ 0.12
PTCH1-226ENST00000553011 CXXC1Q9P0U4 656 aaPredicted RBP15.78■□□□□ 0.12
PTCH1-226ENST00000553011 TRPV2Q9Y5S1 764 aa15.78■□□□□ 0.12
PTCH1-226ENST00000553011 IGKV6-21A0A0C4DH24 114 aa15.77■□□□□ 0.12
PTCH1-226ENST00000553011 MAFO75444 373 aaPredicted RBP15.77■□□□□ 0.12
PTCH1-226ENST00000553011 RPLP2P05387 115 aaKnown RBP15.77■□□□□ 0.12
PTCH1-226ENST00000553011 GRIN1Q05586 938 aa15.77■□□□□ 0.12
PTCH1-226ENST00000553011 LPIN1Q14693 890 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms