RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 LZTR1Q8N653 840 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 PIGBQ92521 554 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 MBD6Q96DN6 1003 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 TRAIPQ9BWF2 469 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 TAF1DQ9H5J8 278 aaPredicted RBP3.29□□□□□ -1.88
PTCH1-223ENST00000551623 FBLN5Q9UBX5 448 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 COL5A3P25940 1745 aaPredicted RBP3.29□□□□□ -1.88
PTCH1-223ENST00000551623 KAT6BQ8WYB5 2073 aa3.29□□□□□ -1.88
PTCH1-223ENST00000551623 KTN1Q86UP2 1357 aaKnown RBP3.28□□□□□ -1.88
PTCH1-223ENST00000551623 TONSLQ96HA7 1378 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 USP42Q9H9J4 1324 aaKnown RBP3.28□□□□□ -1.88
PTCH1-223ENST00000551623 LOC105371045A0A1W2PR82 267 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 POLRMTO00411 1230 aaKnown RBP3.28□□□□□ -1.88
PTCH1-223ENST00000551623 RPS6KA4O75676 772 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 CYP1A1P04798 512 aaPredicted RBP3.28□□□□□ -1.88
PTCH1-223ENST00000551623 ZNF28P17035 718 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 TM4SF1P30408 202 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 NOP2P46087 812 aaKnown RBP3.28□□□□□ -1.88
PTCH1-223ENST00000551623 ST13P50502 369 aaKnown RBP3.28□□□□□ -1.88
PTCH1-223ENST00000551623 ITGA1P56199 1179 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 KRTAP10-9P60411 292 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 PTH1RQ03431 593 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 FAM160A1Q05DH4 1040 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 PRKD1Q15139 912 aaPredicted RBP3.28□□□□□ -1.88
PTCH1-223ENST00000551623 NRN1LQ496H8 165 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 PKN3Q6P5Z2 889 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 ETV3LQ6ZN32 361 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 PNMA8AQ86V59 439 aaPredicted RBP3.28□□□□□ -1.88
PTCH1-223ENST00000551623 ATG4CQ96DT6 458 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 CAPNS2Q96L46 248 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 SLC6A18Q96N87 628 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 GPR101Q96P66 508 aaPredicted RBP3.28□□□□□ -1.88
PTCH1-223ENST00000551623 CSRNP2Q9H175 543 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 MEGF9Q9H1U4 602 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 COPRSQ9NQ92 184 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 SAGE1Q9NXZ1 904 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 RWDD3Q9Y3V2 267 aa3.28□□□□□ -1.88
PTCH1-223ENST00000551623 EVC2Q86UK5 1308 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 FER1L6Q2WGJ9 1857 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 SHOXO15266 292 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 ATE1O95260 518 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 CHRNA5P30532 468 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 HOXC9P31274 260 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 IL12RB1P42701 662 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 POU4F1Q01851 419 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 TAF1CQ15572 869 aaPredicted RBP3.27□□□□□ -1.89
PTCH1-223ENST00000551623 LSM12Q3MHD2 195 aaKnown RBP3.27□□□□□ -1.89
PTCH1-223ENST00000551623 HS1BP3Q53T59 392 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 EAPPQ56P03 285 aaPredicted RBP3.27□□□□□ -1.89
PTCH1-223ENST00000551623 SNAP47Q5SQN1 464 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 PRAMEF18Q5VWM3 479 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 WWC2Q6AWC2 1192 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.27□□□□□ -1.89
PTCH1-223ENST00000551623 CD300LDQ6UXZ3 194 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 NLRC3Q7RTR2 1065 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 TMC4Q7Z404 712 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 KBTBD2Q8IY47 623 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 C7orf61Q8IZ16 206 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 FAM26EQ8N5C1 309 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 NEU4Q8WWR8 484 aaPredicted RBP3.27□□□□□ -1.89
PTCH1-223ENST00000551623 FCRL3Q96P31 734 aaPredicted RBP3.27□□□□□ -1.89
PTCH1-223ENST00000551623 DDX21Q9NR30 783 aaKnown RBP eCLIP3.27□□□□□ -1.89
PTCH1-223ENST00000551623 PCDHB14Q9Y5E9 798 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 SNED1Q8TER0 1413 aa3.27□□□□□ -1.89
PTCH1-223ENST00000551623 DICER1Q9UPY3 1922 aaKnown RBP3.27□□□□□ -1.89
PTCH1-223ENST00000551623 A0A1W2PP64 1363 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 A0A0C4DFX4 3053 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 DDNO94850 711 aaPredicted RBP3.26□□□□□ -1.89
PTCH1-223ENST00000551623 IFNGR1P15260 489 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 CWF19L2Q2TBE0 894 aaKnown RBP3.26□□□□□ -1.89
PTCH1-223ENST00000551623 USP39Q53GS9 565 aaKnown RBP3.26□□□□□ -1.89
PTCH1-223ENST00000551623 NBPF6Q5VWK0 638 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 CST9Q5W186 159 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 SND1Q7KZF4 910 aaKnown RBP eCLIP3.26□□□□□ -1.89
PTCH1-223ENST00000551623 NME9Q86XW9 330 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 MIB1Q86YT6 1006 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 CNTROBQ8N137 903 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 GOLM1Q8NBJ4 401 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 RAPGEF4Q8WZA2 1011 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 NBPF4Q96M43 638 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 YTHDC1Q96MU7 727 aaKnown RBP3.26□□□□□ -1.89
PTCH1-223ENST00000551623 TMEM74Q96NL1 305 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 PUS7Q96PZ0 661 aaKnown RBP3.26□□□□□ -1.89
PTCH1-223ENST00000551623 ADOQ96SZ5 270 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 TMEM168Q9H0V1 697 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 ASAP1Q9ULH1 1129 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 SIT1Q9Y3P8 196 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 ITGB4P16144 1822 aa3.26□□□□□ -1.89
PTCH1-223ENST00000551623 TLR3O15455 904 aaKnown RBP3.25□□□□□ -1.89
PTCH1-223ENST00000551623 B4GALT4O60513 344 aa3.25□□□□□ -1.89
PTCH1-223ENST00000551623 GBP2P32456 591 aaPredicted RBP3.25□□□□□ -1.89
PTCH1-223ENST00000551623 EPHX2P34913 555 aa3.25□□□□□ -1.89
PTCH1-223ENST00000551623 RFC4P35249 363 aa3.25□□□□□ -1.89
PTCH1-223ENST00000551623 CRKP46108 304 aa3.25□□□□□ -1.89
PTCH1-223ENST00000551623 SOX10P56693 466 aa3.25□□□□□ -1.89
PTCH1-223ENST00000551623 PSMD2Q13200 908 aa3.25□□□□□ -1.89
PTCH1-223ENST00000551623 NOGQ13253 232 aa3.25□□□□□ -1.89
PTCH1-223ENST00000551623 PKN2Q16513 984 aaKnown RBP3.25□□□□□ -1.89
PTCH1-223ENST00000551623 SOGA3Q5TF21 947 aa3.25□□□□□ -1.89
PTCH1-223ENST00000551623 ZC3H18Q86VM9 953 aaKnown RBP3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms