RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 HOMER1Q86YM7 354 aa12.14□□□□□ -0.47
VPS29-208ENST00000550267 SMRP1Q8NCR6 262 aa12.14□□□□□ -0.47
VPS29-208ENST00000550267 MTMR8Q96EF0 704 aa12.14□□□□□ -0.47
VPS29-208ENST00000550267 PLVAPQ9BX97 442 aa12.14□□□□□ -0.47
VPS29-208ENST00000550267 ATP13A2Q9NQ11 1180 aa12.14□□□□□ -0.47
VPS29-208ENST00000550267 ZNF215Q9UL58 517 aaPredicted RBP12.14□□□□□ -0.47
VPS29-208ENST00000550267 KLRF2D3W0D1 207 aa12.13□□□□□ -0.47
VPS29-208ENST00000550267 ZBTB5O15062 677 aa12.13□□□□□ -0.47
VPS29-208ENST00000550267 GLP2RO95838 553 aa12.13□□□□□ -0.47
VPS29-208ENST00000550267 ITGB1P05556 798 aa12.13□□□□□ -0.47
VPS29-208ENST00000550267 ICAM3P32942 547 aa12.13□□□□□ -0.47
VPS29-208ENST00000550267 NRIP1P48552 1158 aa12.13□□□□□ -0.47
VPS29-208ENST00000550267 NFX1Q12986 1120 aaKnown RBP12.13□□□□□ -0.47
VPS29-208ENST00000550267 COASYQ13057 564 aa12.13□□□□□ -0.47
VPS29-208ENST00000550267 NEDD9Q14511 834 aa12.13□□□□□ -0.47
VPS29-208ENST00000550267 CBX2Q14781 532 aaPredicted RBP12.13□□□□□ -0.47
VPS29-208ENST00000550267 GNPTABQ3T906 1256 aa12.13□□□□□ -0.47
VPS29-208ENST00000550267 RBM23Q86U06 439 aaKnown RBP12.13□□□□□ -0.47
VPS29-208ENST00000550267 SAMD3Q8N6K7 520 aa12.13□□□□□ -0.47
VPS29-208ENST00000550267 EFHBQ8N7U6 833 aa12.13□□□□□ -0.47
VPS29-208ENST00000550267 SPPL3Q8TCT6 385 aa12.13□□□□□ -0.47
VPS29-208ENST00000550267 LINC01599Q8WXQ3 324 aa12.13□□□□□ -0.47
VPS29-208ENST00000550267 P2RX5Q93086 422 aa12.13□□□□□ -0.47
VPS29-208ENST00000550267 PPP2R3CQ969Q6 453 aa12.13□□□□□ -0.47
VPS29-208ENST00000550267 RTEL1Q9NZ71 1219 aa12.13□□□□□ -0.47
VPS29-208ENST00000550267 BARX2Q9UMQ3 279 aaPredicted RBP12.13□□□□□ -0.47
VPS29-208ENST00000550267 USP15Q9Y4E8 981 aaPredicted RBP12.13□□□□□ -0.47
VPS29-208ENST00000550267 NRCAMQ92823 1304 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 KMT2EQ8IZD2 1858 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 C5orf42Q9H799 3197 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 TECTAO75443 2155 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 USP34Q70CQ2 3546 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 SPATA31C2B4DYI2 1134 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 J3QL48 77 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 NT5C2P49902 561 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 MFAP1P55081 439 aaKnown RBP12.12□□□□□ -0.47
VPS29-208ENST00000550267 SIGLEC14Q08ET2 396 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 SLC35G1Q2M3R5 365 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 PAN2Q504Q3 1202 aaKnown RBP12.12□□□□□ -0.47
VPS29-208ENST00000550267 FBXO47Q5MNV8 452 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 IFIT1BQ5T764 474 aaKnown RBP12.12□□□□□ -0.47
VPS29-208ENST00000550267 TICAM2Q86XR7 235 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 KLHL23Q8NBE8 558 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 POF1BQ8WVV4 589 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 RILPL2Q969X0 211 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 ASIC4Q96FT7 647 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 RPGRIP1Q96KN7 1286 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 INPP4AQ96PE3 977 aaPredicted RBP12.12□□□□□ -0.47
VPS29-208ENST00000550267 PIGSQ96S52 555 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 MAD2L2Q9UI95 211 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 PCDHGC5Q9Y5F6 944 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 CDY2AQ9Y6F7 541 aa12.12□□□□□ -0.47
VPS29-208ENST00000550267 FRMPD4Q14CM0 1322 aa12.11□□□□□ -0.47
VPS29-208ENST00000550267 LAMA4Q16363 1823 aa12.11□□□□□ -0.47
VPS29-208ENST00000550267 PALM3A6NDB9 673 aaPredicted RBP12.11□□□□□ -0.47
VPS29-208ENST00000550267 FIBPO43427 364 aa12.11□□□□□ -0.47
VPS29-208ENST00000550267 SDSP20132 328 aa12.11□□□□□ -0.47
VPS29-208ENST00000550267 RBM10P98175 930 aaKnown RBP12.11□□□□□ -0.47
VPS29-208ENST00000550267 NAALADL2Q58DX5 795 aa12.11□□□□□ -0.47
VPS29-208ENST00000550267 TAF2Q6P1X5 1199 aa12.11□□□□□ -0.47
VPS29-208ENST00000550267 RTN4RL1Q86UN2 441 aaPredicted RBP12.11□□□□□ -0.47
VPS29-208ENST00000550267 CMTR2Q8IYT2 770 aaKnown RBP12.11□□□□□ -0.47
VPS29-208ENST00000550267 DNAJB3Q8WWF6 145 aa12.11□□□□□ -0.47
VPS29-208ENST00000550267 ATOH1Q92858 354 aaPredicted RBP12.11□□□□□ -0.47
VPS29-208ENST00000550267 UBAC1Q9BSL1 405 aa12.11□□□□□ -0.47
VPS29-208ENST00000550267 PHF7Q9BWX1 381 aaPredicted RBP12.11□□□□□ -0.47
VPS29-208ENST00000550267 AGO3Q9H9G7 860 aaKnown RBP12.11□□□□□ -0.47
VPS29-208ENST00000550267 MYH6P13533 1939 aa12.11□□□□□ -0.47
VPS29-208ENST00000550267 STAM2O75886 525 aa12.1□□□□□ -0.47
VPS29-208ENST00000550267 AVPR2P30518 371 aa12.1□□□□□ -0.47
VPS29-208ENST00000550267 CD52P31358 61 aa12.1□□□□□ -0.47
VPS29-208ENST00000550267 TCF7P36402 384 aaPredicted RBP12.1□□□□□ -0.47
VPS29-208ENST00000550267 GATMP50440 423 aa12.1□□□□□ -0.47
VPS29-208ENST00000550267 PPFIA1Q13136 1202 aa12.1□□□□□ -0.47
VPS29-208ENST00000550267 SEC23AQ15436 765 aa12.1□□□□□ -0.47
VPS29-208ENST00000550267 GRIK4Q16099 956 aa12.1□□□□□ -0.47
VPS29-208ENST00000550267 TSHZ1Q6ZSZ6 1077 aa12.1□□□□□ -0.47
VPS29-208ENST00000550267 RSPH3Q86UC2 560 aa12.1□□□□□ -0.47
VPS29-208ENST00000550267 NPAS4Q8IUM7 802 aa12.1□□□□□ -0.47
VPS29-208ENST00000550267 ZBTB10Q96DT7 871 aa12.1□□□□□ -0.47
VPS29-208ENST00000550267 TUBE1Q9UJT0 475 aa12.1□□□□□ -0.47
VPS29-208ENST00000550267 KIAA1671Q9BY89 1806 aa12.09□□□□□ -0.47
VPS29-208ENST00000550267 DOCK5Q9H7D0 1870 aa12.09□□□□□ -0.47
VPS29-208ENST00000550267 H0Y858 1186 aa12.09□□□□□ -0.47
VPS29-208ENST00000550267 PER2O15055 1255 aa12.09□□□□□ -0.47
VPS29-208ENST00000550267 WIPF1O43516 503 aa12.09□□□□□ -0.47
VPS29-208ENST00000550267 PPFIA3O75145 1194 aa12.09□□□□□ -0.47
VPS29-208ENST00000550267 MARK3P27448 753 aa12.09□□□□□ -0.47
VPS29-208ENST00000550267 WNT7BP56706 349 aa12.09□□□□□ -0.47
VPS29-208ENST00000550267 MRPS6P82932 125 aaKnown RBP12.09□□□□□ -0.47
VPS29-208ENST00000550267 TRAF1Q13077 416 aa12.09□□□□□ -0.47
VPS29-208ENST00000550267 IMMTQ16891 758 aaKnown RBP12.09□□□□□ -0.47
VPS29-208ENST00000550267 MARCH8Q5T0T0 291 aa12.09□□□□□ -0.47
VPS29-208ENST00000550267 CWC27Q6UX04 472 aaKnown RBP12.09□□□□□ -0.47
VPS29-208ENST00000550267 CYB5R4Q7L1T6 521 aa12.09□□□□□ -0.47
VPS29-208ENST00000550267 KRT23Q9C075 422 aa12.09□□□□□ -0.47
VPS29-208ENST00000550267 RIOX1Q9H6W3 641 aa12.09□□□□□ -0.47
VPS29-208ENST00000550267 TLE6Q9H808 572 aa12.09□□□□□ -0.47
VPS29-208ENST00000550267 SENP2Q9HC62 589 aa12.09□□□□□ -0.47
VPS29-208ENST00000550267 TLR9Q9NR96 1032 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms