RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 GPC6Q9Y625 555 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-204ENST00000549064 V9GY48 417 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-204ENST00000549064 RALGAPA2Q2PPJ7 1873 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 CACNA1BQ00975 2339 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 MYH7P12883 1935 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 FAM186AA6NE01 2351 aa7.74□□□□□ -1.17
LIMA1-204ENST00000549064 H0Y858 1186 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 MBTPS2O43462 519 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 GDF9O60383 454 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 KRT37O76014 449 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 MBD4O95243 580 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 CHGBP05060 677 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 RHOQP17081 205 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 CDK11BP21127 795 aaKnown RBP7.73□□□□□ -1.17
LIMA1-204ENST00000549064 SNAP25P60880 206 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 PTPROQ16827 1216 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 EPC2Q52LR7 807 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 MUM1L1Q5H9M0 696 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 NFRKBQ6P4R8 1299 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.73□□□□□ -1.17
LIMA1-204ENST00000549064 LRRC8DQ7L1W4 858 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 ERMP1Q7Z2K6 904 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 FBXL6Q8N531 539 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 C1orf127Q8N9H9 656 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 OR6J1Q8NGC5 347 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 COPS5Q92905 334 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 PRRX2Q99811 253 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 CHRDQ9H2X0 955 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 NSUN3Q9H649 340 aaKnown RBP7.73□□□□□ -1.17
LIMA1-204ENST00000549064 TLR9Q9NR96 1032 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 CUEDC1Q9NWM3 386 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-204ENST00000549064 TOR4AQ9NXH8 423 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 CNTN3Q9P232 1028 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 RIF1Q5UIP0 2472 aaKnown RBP7.73□□□□□ -1.17
LIMA1-204ENST00000549064 WDR87Q6ZQQ6 2873 aa7.73□□□□□ -1.17
LIMA1-204ENST00000549064 STXBP3O00186 592 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 XYLBO75191 536 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 TBX10O75333 385 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 CSPG5O95196 566 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 CXCL10P02778 98 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 ALAS1P13196 640 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 SELPP16109 830 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 MSX1P28360 303 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 CPT1AP50416 773 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 OAZ1P54368 228 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 ZXDAP98168 799 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 TYRO3Q06418 890 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 PAK2Q13177 524 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 GPM6BQ13491 265 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 PTGISQ16647 500 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 LRRFIP1Q32MZ4 808 aaKnown RBP7.72□□□□□ -1.17
LIMA1-204ENST00000549064 GDF6Q6KF10 455 aaPredicted RBP7.72□□□□□ -1.17
LIMA1-204ENST00000549064 LRRC47Q8N1G4 583 aaKnown RBP7.72□□□□□ -1.17
LIMA1-204ENST00000549064 RNF217Q8TC41 542 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 SSH3Q8TE77 659 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 AFAP1L1Q8TED9 768 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 TRERF1Q96PN7 1200 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 WDR11Q9BZH6 1224 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 VTA1Q9NP79 307 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 ATP8A2Q9NTI2 1148 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 NYAP2Q9P242 653 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 CLIP2Q9UDT6 1046 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 CTNNA3Q9UI47 895 aa7.72□□□□□ -1.17
LIMA1-204ENST00000549064 ISY1Q9ULR0 285 aaKnown RBP7.72□□□□□ -1.17
LIMA1-204ENST00000549064 ABHD14A-ACY1A0A1B0GW23 586 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 MED19A0JLT2 244 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-204ENST00000549064 PRR23AA6NEV1 266 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 H3BNC9 293 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 GOLIM4O00461 696 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 LINC01565O15544 149 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 AVPR2P30518 371 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 ID4P47928 161 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 ST13P50502 369 aaKnown RBP7.71□□□□□ -1.18
LIMA1-204ENST00000549064 PTPN11Q06124 597 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-204ENST00000549064 MBTPS1Q14703 1052 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 CTC1Q2NKJ3 1217 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 C6orf118Q5T5N4 469 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 CTR9Q6PD62 1173 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 TMED8Q6PL24 325 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-204ENST00000549064 NSMFQ6X4W1 530 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 AACSQ86V21 672 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 MCF2L2Q86YR7 1114 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 SPNS2Q8IVW8 549 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 GALNT12Q8IXK2 581 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 MYOCDQ8IZQ8 938 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 CAGE1Q8TC20 777 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 MORC4Q8TE76 937 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 CEP63Q96MT8 703 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 POP1Q99575 1024 aaKnown RBP7.71□□□□□ -1.18
LIMA1-204ENST00000549064 FSD1Q9BTV5 496 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 TIMMDC1Q9NPL8 285 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 CYP39A1Q9NYL5 469 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 FEM1BQ9UK73 627 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 INSL6Q9Y581 213 aa7.71□□□□□ -1.18
LIMA1-204ENST00000549064 FRYLO94915 3013 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 DMXL1Q9Y485 3027 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 DNAH14Q0VDD8 3507 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 A0A1W2PNR3 127 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 TMEM232C9JQI7 657 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 PROB1E7EW31 1015 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms