RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 XKR3Q5GH77 459 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 KIAA0319LQ8IZA0 1049 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 SEPT8Q92599 483 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 APBB2Q92870 758 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 TIFAQ96CG3 184 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 ZBTB10Q96DT7 871 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 OSBPL7Q9BZF2 842 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 SEMA6BQ9H3T3 888 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 NRBP2Q9NSY0 501 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 MSRAQ9UJ68 235 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 PCDHA11Q9Y5I1 949 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 CDY2AQ9Y6F7 541 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 COL6A3P12111 3177 aa13.36□□□□□ -0.27
YBX3-217ENST00000546164 EML1O00423 815 aa13.35□□□□□ -0.27
YBX3-217ENST00000546164 NEMFO60524 1076 aa13.35□□□□□ -0.27
YBX3-217ENST00000546164 STBD1O95210 358 aa13.35□□□□□ -0.27
YBX3-217ENST00000546164 PSMC5P62195 406 aa13.35□□□□□ -0.27
YBX3-217ENST00000546164 LPIN1Q14693 890 aa13.35□□□□□ -0.27
YBX3-217ENST00000546164 EPHA7Q15375 998 aa13.35□□□□□ -0.27
YBX3-217ENST00000546164 TARBP2Q15633 366 aaKnown RBP13.35□□□□□ -0.27
YBX3-217ENST00000546164 CALCRLQ16602 461 aa13.35□□□□□ -0.27
YBX3-217ENST00000546164 FBXO47Q5MNV8 452 aa13.35□□□□□ -0.27
YBX3-217ENST00000546164 FAM43BQ6ZT52 329 aaPredicted RBP13.35□□□□□ -0.27
YBX3-217ENST00000546164 NOSTRINQ8IVI9 506 aa13.35□□□□□ -0.27
YBX3-217ENST00000546164 HERC6Q8IVU3 1022 aa13.35□□□□□ -0.27
YBX3-217ENST00000546164 LINC01465Q8N7H1 131 aa13.35□□□□□ -0.27
YBX3-217ENST00000546164 USP38Q8NB14 1042 aa13.35□□□□□ -0.27
YBX3-217ENST00000546164 MTMR9Q96QG7 549 aa13.35□□□□□ -0.27
YBX3-217ENST00000546164 NIFKQ9BYG3 293 aaKnown RBP13.35□□□□□ -0.27
YBX3-217ENST00000546164 IFIH1Q9BYX4 1025 aaKnown RBP13.35□□□□□ -0.27
YBX3-217ENST00000546164 FAM49AQ9H0Q0 323 aaPredicted RBP13.35□□□□□ -0.27
YBX3-217ENST00000546164 YBX2Q9Y2T7 364 aaKnown RBP13.35□□□□□ -0.27
YBX3-217ENST00000546164 TRPV2Q9Y5S1 764 aa13.35□□□□□ -0.27
YBX3-217ENST00000546164 MYH9P35579 1960 aaKnown RBP13.34□□□□□ -0.27
YBX3-217ENST00000546164 KIF28PB7ZC32 967 aa13.34□□□□□ -0.27
YBX3-217ENST00000546164 MARCH6O60337 910 aa13.34□□□□□ -0.27
YBX3-217ENST00000546164 DKC1O60832 514 aaKnown RBP eCLIP13.34□□□□□ -0.27
YBX3-217ENST00000546164 P4HBP07237 508 aaKnown RBP13.34□□□□□ -0.27
YBX3-217ENST00000546164 GHRP10912 638 aa13.34□□□□□ -0.27
YBX3-217ENST00000546164 QARSP47897 775 aaKnown RBP13.34□□□□□ -0.27
YBX3-217ENST00000546164 CUL4AQ13619 759 aa13.34□□□□□ -0.27
YBX3-217ENST00000546164 TSHZ1Q6ZSZ6 1077 aa13.34□□□□□ -0.27
YBX3-217ENST00000546164 ZNF710Q8N1W2 664 aa13.34□□□□□ -0.27
YBX3-217ENST00000546164 SPDYE1Q8NFV5 336 aaPredicted RBP13.34□□□□□ -0.27
YBX3-217ENST00000546164 GUCD1Q96NT3 240 aa13.34□□□□□ -0.27
YBX3-217ENST00000546164 CELF4Q9BZC1 486 aaKnown RBP13.34□□□□□ -0.27
YBX3-217ENST00000546164 ZNF576Q9H609 170 aa13.34□□□□□ -0.27
YBX3-217ENST00000546164 PCDHA12Q9UN75 941 aa13.34□□□□□ -0.27
YBX3-217ENST00000546164 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.34□□□□□ -0.27
YBX3-217ENST00000546164 M0QZ92 97 aa13.33□□□□□ -0.28
YBX3-217ENST00000546164 GJB5O95377 273 aa13.33□□□□□ -0.28
YBX3-217ENST00000546164 GJB2P29033 226 aa13.33□□□□□ -0.28
YBX3-217ENST00000546164 RABGGTBP53611 331 aa13.33□□□□□ -0.28
YBX3-217ENST00000546164 DEFB103AP81534 67 aa13.33□□□□□ -0.28
YBX3-217ENST00000546164 C4orf19Q8IY42 314 aa13.33□□□□□ -0.28
YBX3-217ENST00000546164 BANK1Q8NDB2 785 aa13.33□□□□□ -0.28
YBX3-217ENST00000546164 CEP89Q96ST8 783 aa13.33□□□□□ -0.28
YBX3-217ENST00000546164 TMEM60Q9H2L4 133 aa13.33□□□□□ -0.28
YBX3-217ENST00000546164 STXBP5LQ9Y2K9 1186 aa13.33□□□□□ -0.28
YBX3-217ENST00000546164 PPME1Q9Y570 386 aa13.33□□□□□ -0.28
YBX3-217ENST00000546164 IGKV6-21A0A0C4DH24 114 aa13.32□□□□□ -0.28
YBX3-217ENST00000546164 AMHP03971 560 aa13.32□□□□□ -0.28
YBX3-217ENST00000546164 TMOD1P28289 359 aa13.32□□□□□ -0.28
YBX3-217ENST00000546164 MCM7P33993 719 aa13.32□□□□□ -0.28
YBX3-217ENST00000546164 GNL2Q13823 731 aaKnown RBP13.32□□□□□ -0.28
YBX3-217ENST00000546164 NCAPH2Q6IBW4 605 aa13.32□□□□□ -0.28
YBX3-217ENST00000546164 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.32□□□□□ -0.281e-9■■■■■ 31
YBX3-217ENST00000546164 ANO5Q75V66 913 aa13.32□□□□□ -0.28
YBX3-217ENST00000546164 TRMT1LQ7Z2T5 733 aaKnown RBP13.32□□□□□ -0.28
YBX3-217ENST00000546164 NEK9Q8TD19 979 aa13.32□□□□□ -0.28
YBX3-217ENST00000546164 FAM161BQ96MY7 647 aa13.32□□□□□ -0.28
YBX3-217ENST00000546164 CDX2Q99626 313 aaPredicted RBP13.32□□□□□ -0.28
YBX3-217ENST00000546164 HSD17B14Q9BPX1 270 aa13.32□□□□□ -0.28
YBX3-217ENST00000546164 LXNQ9BS40 222 aa13.32□□□□□ -0.28
YBX3-217ENST00000546164 NKX2-4Q9H2Z4 354 aa13.32□□□□□ -0.28
YBX3-217ENST00000546164 TTC12Q9H892 705 aaPredicted RBP13.32□□□□□ -0.28
YBX3-217ENST00000546164 AGO3Q9H9G7 860 aaKnown RBP13.32□□□□□ -0.28
YBX3-217ENST00000546164 SLC28A3Q9HAS3 691 aa13.32□□□□□ -0.28
YBX3-217ENST00000546164 WRAP73Q9P2S5 460 aaPredicted RBP13.32□□□□□ -0.28
YBX3-217ENST00000546164 SEPT9Q9UHD8 586 aaPredicted RBP13.32□□□□□ -0.28
YBX3-217ENST00000546164 NOL7Q9UMY1 257 aaKnown RBP13.32□□□□□ -0.28
YBX3-217ENST00000546164 SMC3Q9UQE7 1217 aa13.32□□□□□ -0.28
YBX3-217ENST00000546164 WDR81Q562E7 1941 aa13.32□□□□□ -0.28
YBX3-217ENST00000546164 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.31□□□□□ -0.28
YBX3-217ENST00000546164 TLL1O43897 1013 aa13.31□□□□□ -0.28
YBX3-217ENST00000546164 LYPLA2O95372 231 aa13.31□□□□□ -0.28
YBX3-217ENST00000546164 MYOGP15173 224 aa13.31□□□□□ -0.28
YBX3-217ENST00000546164 ATP2B1P20020 1258 aa13.31□□□□□ -0.28
YBX3-217ENST00000546164 TXKP42681 527 aa13.31□□□□□ -0.28
YBX3-217ENST00000546164 CRYBB1P53674 252 aaPredicted RBP13.31□□□□□ -0.28
YBX3-217ENST00000546164 TBC1D8BQ0IIM8 1120 aa13.31□□□□□ -0.28
YBX3-217ENST00000546164 TMEM62Q0P6H9 643 aa13.31□□□□□ -0.28
YBX3-217ENST00000546164 GRIN2CQ14957 1233 aa13.31□□□□□ -0.28
YBX3-217ENST00000546164 TTC38Q5R3I4 469 aa13.31□□□□□ -0.28
YBX3-217ENST00000546164 EFCAB12Q6NXP0 572 aa13.31□□□□□ -0.28
YBX3-217ENST00000546164 METTL13Q8N6R0 699 aa13.31□□□□□ -0.28
YBX3-217ENST00000546164 MAP7D2Q96T17 732 aa13.31□□□□□ -0.28
YBX3-217ENST00000546164 RAD9AQ99638 391 aa13.31□□□□□ -0.28
YBX3-217ENST00000546164 FTHL17Q9BXU8 183 aa13.31□□□□□ -0.28
YBX3-217ENST00000546164 ZSWIM4Q9H7M6 989 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms