RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 ACAP1Q15027 740 aa17.85■□□□□ 0.45
CLSTN3-216ENST00000545663 FNDC1Q4ZHG4 1894 aaPredicted RBP17.85■□□□□ 0.45
CLSTN3-216ENST00000545663 IER5Q5VY09 327 aa17.85■□□□□ 0.45
CLSTN3-216ENST00000545663 TMC5Q6UXY8 1006 aa17.85■□□□□ 0.45
CLSTN3-216ENST00000545663 PCDHA1Q9Y5I3 950 aa17.85■□□□□ 0.45
CLSTN3-216ENST00000545663 TRPV2Q9Y5S1 764 aa17.85■□□□□ 0.45
CLSTN3-216ENST00000545663 IGSF9BQ9UPX0 1349 aa17.84■□□□□ 0.45
CLSTN3-216ENST00000545663 LAG3P18627 525 aa17.84■□□□□ 0.45
CLSTN3-216ENST00000545663 RFX1P22670 979 aa17.84■□□□□ 0.45
CLSTN3-216ENST00000545663 XRRA1Q6P2D8 792 aa17.84■□□□□ 0.45
CLSTN3-216ENST00000545663 ZBTB40Q9NUA8 1239 aa17.84■□□□□ 0.45
CLSTN3-216ENST00000545663 SQORQ9Y6N5 450 aa17.84■□□□□ 0.45
CLSTN3-216ENST00000545663 CACNA1IQ9P0X4 2223 aa17.84■□□□□ 0.45
CLSTN3-216ENST00000545663 FANCMQ8IYD8 2048 aa17.84■□□□□ 0.45
CLSTN3-216ENST00000545663 KAT6AQ92794 2004 aa17.84■□□□□ 0.45
CLSTN3-216ENST00000545663 KINO60870 393 aaKnown RBP17.83■□□□□ 0.44
CLSTN3-216ENST00000545663 GLULP15104 373 aa17.83■□□□□ 0.44
CLSTN3-216ENST00000545663 CA8P35219 290 aa17.83■□□□□ 0.44
CLSTN3-216ENST00000545663 TCF7P36402 384 aaPredicted RBP17.83■□□□□ 0.44
CLSTN3-216ENST00000545663 HAND2P61296 217 aa17.83■□□□□ 0.44
CLSTN3-216ENST00000545663 SMC1AQ14683 1233 aaKnown RBP17.83■□□□□ 0.44
CLSTN3-216ENST00000545663 KCNT2Q6UVM3 1135 aa17.83■□□□□ 0.44
CLSTN3-216ENST00000545663 ACSF2Q96CM8 615 aaPredicted RBP17.83■□□□□ 0.44
CLSTN3-216ENST00000545663 ADAM2Q99965 735 aa17.83■□□□□ 0.44
CLSTN3-216ENST00000545663 AMNQ9BXJ7 453 aa17.83■□□□□ 0.44
CLSTN3-216ENST00000545663 CELF4Q9BZC1 486 aaKnown RBP17.83■□□□□ 0.44
CLSTN3-216ENST00000545663 SH2B1Q9NRF2 756 aaPredicted RBP17.83■□□□□ 0.44
CLSTN3-216ENST00000545663 WNT16Q9UBV4 365 aa17.83■□□□□ 0.44
CLSTN3-216ENST00000545663 LRRN2O75325 713 aa17.82■□□□□ 0.44
CLSTN3-216ENST00000545663 FGAP02671 866 aa17.82■□□□□ 0.44
CLSTN3-216ENST00000545663 TGM1P22735 817 aa17.82■□□□□ 0.44
CLSTN3-216ENST00000545663 HNRNPUQ00839 825 aaKnown RBP eCLIP17.82■□□□□ 0.44
CLSTN3-216ENST00000545663 PPM1JQ5JR12 505 aa17.82■□□□□ 0.44
CLSTN3-216ENST00000545663 PNMA1Q8ND90 353 aa17.82■□□□□ 0.44
CLSTN3-216ENST00000545663 TRAPPC12Q8WVT3 735 aa17.82■□□□□ 0.44
CLSTN3-216ENST00000545663 AUTS2Q8WXX7 1259 aa17.82■□□□□ 0.44
CLSTN3-216ENST00000545663 INPP4AQ96PE3 977 aaPredicted RBP17.82■□□□□ 0.44
CLSTN3-216ENST00000545663 RTKNQ9BST9 563 aa17.82■□□□□ 0.44
CLSTN3-216ENST00000545663 CDHR5Q9HBB8 845 aa17.82■□□□□ 0.44
CLSTN3-216ENST00000545663 SIT1Q9Y3P8 196 aa17.82■□□□□ 0.44
CLSTN3-216ENST00000545663 PRR5-ARHGAP8B1AHC4 643 aa17.81■□□□□ 0.44
CLSTN3-216ENST00000545663 C9IYK1 514 aa17.81■□□□□ 0.44
CLSTN3-216ENST00000545663 CXCL14O95715 111 aa17.81■□□□□ 0.44
CLSTN3-216ENST00000545663 INSRRP14616 1297 aa17.81■□□□□ 0.44
CLSTN3-216ENST00000545663 ARHGAP8P85298 464 aa17.81■□□□□ 0.44
CLSTN3-216ENST00000545663 KRT17Q04695 432 aa17.81■□□□□ 0.44
CLSTN3-216ENST00000545663 GNPTABQ3T906 1256 aa17.81■□□□□ 0.44
CLSTN3-216ENST00000545663 OTOP3Q7RTS5 596 aa17.81■□□□□ 0.44
CLSTN3-216ENST00000545663 RGS18Q9NS28 235 aa17.81■□□□□ 0.44
CLSTN3-216ENST00000545663 NOC2LQ9Y3T9 749 aaKnown RBP17.81■□□□□ 0.44
CLSTN3-216ENST00000545663 LOXHD1Q8IVV2 1947 aa17.8■□□□□ 0.44
CLSTN3-216ENST00000545663 GSTTP1A0A1W2PQM5 241 aa17.8■□□□□ 0.44
CLSTN3-216ENST00000545663 DENND3A2RUS2 1198 aa17.8■□□□□ 0.44
CLSTN3-216ENST00000545663 FIBPO43427 364 aa17.8■□□□□ 0.44
CLSTN3-216ENST00000545663 N4BP1O75113 896 aaKnown RBP17.8■□□□□ 0.44
CLSTN3-216ENST00000545663 LMNB2Q03252 620 aa17.8■□□□□ 0.44
CLSTN3-216ENST00000545663 ALX1Q15699 326 aa17.8■□□□□ 0.44
CLSTN3-216ENST00000545663 SLC24A5Q71RS6 500 aa17.8■□□□□ 0.44
CLSTN3-216ENST00000545663 GPATCH3Q96I76 525 aa17.8■□□□□ 0.44
CLSTN3-216ENST00000545663 ZNF558Q96NG5 402 aa17.8■□□□□ 0.44
CLSTN3-216ENST00000545663 ATP6V0A4Q9HBG4 840 aa17.8■□□□□ 0.44
CLSTN3-216ENST00000545663 PARD6AQ9NPB6 346 aa17.8■□□□□ 0.44
CLSTN3-216ENST00000545663 MAP3K20Q9NYL2 800 aaKnown RBP17.8■□□□□ 0.44
CLSTN3-216ENST00000545663 SPG21Q9NZD8 308 aa17.8■□□□□ 0.44
CLSTN3-216ENST00000545663 GCOM1H8Y6P7 765 aaPredicted RBP17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 M0QZ92 97 aa17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 POLR2MP0CAP2 368 aa17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 CCDC149Q6ZUS6 474 aa17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 TBC1D10CQ8IV04 446 aa17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 STAG2Q8N3U4 1231 aa17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 SLC44A3Q8N4M1 653 aa17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 GPR161Q8N6U8 529 aaKnown RBP17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 SLC22A17Q8WUG5 538 aa17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 GLG1Q92896 1179 aa17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 CASD1Q96PB1 797 aa17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 FOXQ1Q9C009 403 aa17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 RNF19AQ9NV58 838 aa17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 DZANK1Q9NVP4 752 aa17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 ERAP1Q9NZ08 941 aa17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 USP18Q9UMW8 372 aa17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 GINS2Q9Y248 185 aa17.79■□□□□ 0.44
CLSTN3-216ENST00000545663 MYH6P13533 1939 aa17.78■□□□□ 0.44
CLSTN3-216ENST00000545663 ATP9AO75110 1047 aa17.78■□□□□ 0.44
CLSTN3-216ENST00000545663 FAM189BP81408 668 aa17.78■□□□□ 0.44
CLSTN3-216ENST00000545663 KRT76Q01546 638 aa17.78■□□□□ 0.44
CLSTN3-216ENST00000545663 ASPRV1Q53RT3 343 aa17.78■□□□□ 0.44
CLSTN3-216ENST00000545663 GPR149Q86SP6 731 aa17.78■□□□□ 0.44
CLSTN3-216ENST00000545663 DGKHQ86XP1 1220 aa17.78■□□□□ 0.44
CLSTN3-216ENST00000545663 GPR152Q8TDT2 470 aa17.78■□□□□ 0.44
CLSTN3-216ENST00000545663 TMEM40Q8WWA1 233 aa17.78■□□□□ 0.44
CLSTN3-216ENST00000545663 IGSF9Q9P2J2 1179 aa17.78■□□□□ 0.44
CLSTN3-216ENST00000545663 ST3GAL5Q9UNP4 418 aa17.78■□□□□ 0.44
CLSTN3-216ENST00000545663 DENND4AQ7Z401 1863 aa17.78■□□□□ 0.44
CLSTN3-216ENST00000545663 TRIM6-TRIM34B2RNG4 842 aa17.77■□□□□ 0.44
CLSTN3-216ENST00000545663 NT5C1B-RDH14C9J2C7 533 aa17.77■□□□□ 0.44
CLSTN3-216ENST00000545663 PARP1P09874 1014 aaKnown RBP17.77■□□□□ 0.44
CLSTN3-216ENST00000545663 MFSD6Q6ZSS7 791 aa17.77■□□□□ 0.44
CLSTN3-216ENST00000545663 CABP7Q86V35 215 aa17.77■□□□□ 0.44
CLSTN3-216ENST00000545663 SLC39A11Q8N1S5 342 aa17.77■□□□□ 0.44
CLSTN3-216ENST00000545663 ST13P5Q8NFI4 369 aaPredicted RBP17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms