RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 CAPN7Q9Y6W3 813 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 PVALEFA0A1B0GWK0 134 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 A0A1W2PQC6 194 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 USP17L12C9JPN9 530 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 USP17L21D6R901 530 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 MAPK13O15264 365 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 CCNE1P24864 410 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 ZAP70P43403 619 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 RESTQ13127 1097 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 ZKSCAN8Q15776 578 aaPredicted RBP8.41□□□□□ -1.06
VPS13D-211ENST00000543710 TSGA10IPQ3SY00 556 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 FAM26FQ5R3K3 315 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 KLHL7Q8IXQ5 586 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 FBXO18Q8NFZ0 1043 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 FAM167AQ96KS9 214 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 APOL6Q9BWW8 343 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 SYNDIG1Q9H7V2 258 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 SPATS2LQ9NUQ6 558 aaKnown RBP8.41□□□□□ -1.06
VPS13D-211ENST00000543710 STRIP2Q9ULQ0 834 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 DOLKQ9UPQ8 538 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 PCDHB12Q9Y5F1 795 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 DPYDQ12882 1025 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 LAMB3Q13751 1172 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 BTBD8Q5XKL5 378 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 PLA2G4DQ86XP0 818 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 SH3TC2Q8TF17 1288 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 N4BP2L2Q92802 583 aaPredicted RBP8.41□□□□□ -1.06
VPS13D-211ENST00000543710 EHD2Q9NZN4 543 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 AGLP35573 1532 aa8.41□□□□□ -1.06
VPS13D-211ENST00000543710 GLTPD2A6NH11 291 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 TAC1P20366 129 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 ESRRGP62508 458 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 RASSF7Q02833 373 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 RAD51AP2Q09MP3 1159 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 ERO1BQ86YB8 467 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 GIPC2Q8TF65 315 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 PGBD4Q96DM1 585 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 HESX1Q9UBX0 185 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 SLC12A6Q9UHW9 1150 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 SCOCQ9UIL1 159 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 ASAP1Q9ULH1 1129 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 TRIM33Q9UPN9 1127 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 AKT3Q9Y243 479 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 DCCP43146 1447 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 RIMS1Q86UR5 1692 aaKnown RBP8.4□□□□□ -1.06
VPS13D-211ENST00000543710 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.4□□□□□ -1.06
VPS13D-211ENST00000543710 PDE6AP16499 860 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 U2AF2P26368 475 aaKnown RBP eCLIP8.4□□□□□ -1.063e-9■■■■□ 26.5
VPS13D-211ENST00000543710 SCRN1Q12765 414 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 EIF2B5Q13144 721 aaKnown RBP8.4□□□□□ -1.06
VPS13D-211ENST00000543710 ADAM9Q13443 819 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 RBBP5Q15291 538 aaKnown RBP8.4□□□□□ -1.06
VPS13D-211ENST00000543710 AP1ARQ63HQ0 302 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 ST13P4Q8IZP2 240 aaPredicted RBP8.4□□□□□ -1.06
VPS13D-211ENST00000543710 PPANQ9NQ55 473 aaKnown RBP8.4□□□□□ -1.06
VPS13D-211ENST00000543710 SUGT1Q9Y2Z0 365 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 MYPNQ86TC9 1320 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 MCF2LO15068 1137 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 TAF5LO75529 589 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 CFBP00751 764 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 C6orf222P0C671 652 aaPredicted RBP8.4□□□□□ -1.06
VPS13D-211ENST00000543710 IFNAR1P17181 557 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 ARL1P40616 181 aaPredicted RBP8.4□□□□□ -1.06
VPS13D-211ENST00000543710 NSUN7Q8NE18 718 aaKnown RBP8.4□□□□□ -1.06
VPS13D-211ENST00000543710 EPSTI1Q96J88 318 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 ZNF212Q9UDV6 495 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 MRPS17Q9Y2R5 130 aaKnown RBP8.4□□□□□ -1.06
VPS13D-211ENST00000543710 RIPOR2Q9Y4F9 1068 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 PCDHA13Q9Y5I0 950 aa8.4□□□□□ -1.06
VPS13D-211ENST00000543710 BTDP43251 543 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 KIF23Q02241 960 aaPredicted RBP8.4□□□□□ -1.07
VPS13D-211ENST00000543710 PPIGQ13427 754 aaKnown RBP eCLIP8.4□□□□□ -1.07
VPS13D-211ENST00000543710 DHX34Q14147 1143 aaKnown RBP8.4□□□□□ -1.07
VPS13D-211ENST00000543710 MAPRE2Q15555 327 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 TCP11X2Q5H9J9 407 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 MAPKAPK5Q8IW41 473 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 THNSL1Q8IYQ7 743 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 ZNF512BQ96KM6 892 aaPredicted RBP8.4□□□□□ -1.07
VPS13D-211ENST00000543710 TRIM45Q9H8W5 580 aaPredicted RBP8.4□□□□□ -1.07
VPS13D-211ENST00000543710 KANSL2Q9H9L4 492 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 CYP26B1Q9NR63 512 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 PCDHA12Q9UN75 941 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 COL15A1P39059 1388 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 BCORL1Q5H9F3 1711 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 PSAPP07602 524 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 INHBAP08476 426 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 HSPA1AP0DMV8 641 aaKnown RBP8.4□□□□□ -1.07
VPS13D-211ENST00000543710 HSPA1BP0DMV9 641 aaKnown RBP8.4□□□□□ -1.07
VPS13D-211ENST00000543710 TFAP4Q01664 338 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 GEN1Q17RS7 908 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 EFHBQ8N7U6 833 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 TUBGCP2Q9BSJ2 902 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 SENP1Q9P0U3 644 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 HEG1Q9ULI3 1381 aa8.4□□□□□ -1.07
VPS13D-211ENST00000543710 ARHGAP42A6NI28 874 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 SMIM23A6NLE4 172 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 TRAPPC3O43617 180 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 RNF8O76064 485 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 RECQLP46063 649 aaPredicted RBP8.39□□□□□ -1.07
VPS13D-211ENST00000543710 CPT1AP50416 773 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms