RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	NIFK	Q9BYG3	293 aa	Known RBP	11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	BHMT2	Q9H2M3	363 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	CYP26B1	Q9NR63	512 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	HTT	P42858	3142 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	NRCAM	Q92823	1304 aa		11.33	□□□□□ -0.6
CPSF7-221	ENST00000543545	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	PQBP1	O60828	265 aa	Known RBP	11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	STBD1	O95210	358 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	EYA4	O95677	639 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	KRT18	P05783	430 aa	Known RBP	11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	PLA2G4B	P0C869	781 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	KLRC1	P26715	233 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	NDUFA8	P51970	172 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	POLG	P54098	1239 aa	Predicted RBP	11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	ZNF200	P98182	395 aa	Predicted RBP	11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	MCM6	Q14566	821 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	PADI6	Q6TGC4	694 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	SLC39A5	Q6ZMH5	540 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	SV2B	Q7L1I2	683 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	KCNK18	Q7Z418	384 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	CEP57L1	Q8IYX8	460 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	METTL13	Q8N6R0	699 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	RAD54L	Q92698	747 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	SEZ6L	Q9BYH1	1024 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	GOLPH3L	Q9H4A5	285 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	SUGCT	Q9HAC7	445 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	STK17A	Q9UEE5	414 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	GTF2IRD1	Q9UHL9	959 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	DBR1	Q9UK59	544 aa	Known RBP	11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545	GRIN2D	O15399	1336 aa		11.32	□□□□□ -0.6
CPSF7-221	ENST00000543545		A0A087X0B3	334 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	TLR3	O15455	904 aa	Known RBP	11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	MAGEB2	O15479	319 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	USO1	O60763	962 aa	Known RBP	11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	COL6A1	P12109	1028 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	MCM4	P33991	863 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	RARRES1	P49788	294 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	PTPN11	Q06124	597 aa	Predicted RBP	11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	PTGIS	Q16647	500 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	GDF6	Q6KF10	455 aa	Predicted RBP	11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	MAEA	Q7L5Y9	396 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	GPBP1	Q86WP2	473 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	EXOC8	Q8IYI6	725 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	RETREG2	Q8NC44	543 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	LMBR1	Q8WVP7	490 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	SLC7A3	Q8WY07	619 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	LARP4B	Q92615	738 aa	Known RBP	11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	ZBTB10	Q96DT7	871 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	CCDC34	Q96HJ3	373 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	JPH2	Q9BR39	696 aa	Predicted RBP	11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	TRMT13	Q9NUP7	481 aa	Known RBP	11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	ATP11B	Q9Y2G3	1177 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	PPME1	Q9Y570	386 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	LRRC37A2	A6NM11	1700 aa		11.31	□□□□□ -0.6
CPSF7-221	ENST00000543545	DCDC2C	A8MYV0	355 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	TREH	O43280	583 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	KIN	O60870	393 aa	Known RBP	11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	DGAT1	O75907	488 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	ZNF202	O95125	648 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	CYP2C9	P11712	490 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	TMOD1	P28289	359 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	RFC5	P40937	340 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	DNM2	P50570	870 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	AMPD3	Q01432	767 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	TLE2	Q04725	743 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	FAM160A1	Q05DH4	1040 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	TARBP2	Q15633	366 aa	Known RBP	11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	TRIM60	Q495X7	471 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	FAM102B	Q5T8I3	360 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	EFCAB12	Q6NXP0	572 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	MTHFD1L	Q6UB35	978 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	SESTD1	Q86VW0	696 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	SYT2	Q8N9I0	419 aa	Predicted RBP	11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	SLC43A3	Q8NBI5	491 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	CNNM3	Q8NE01	707 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	LRRC27	Q9C0I9	530 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	FAM49A	Q9H0Q0	323 aa	Predicted RBP	11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	TRPV6	Q9H1D0	765 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	CUEDC2	Q9H467	287 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	ATP6V0A4	Q9HBG4	840 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	LMBRD1	Q9NUN5	540 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	BLOC1S4	Q9NUP1	217 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	USP25	Q9UHP3	1055 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	SERTAD1	Q9UHV2	236 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	TUBE1	Q9UJT0	475 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	HPSE	Q9Y251	543 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	MROH7	Q68CQ1	1323 aa		11.3	□□□□□ -0.6
CPSF7-221	ENST00000543545	COL1A2	P08123	1366 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	FAM237A	A0A1B0GTK4	181 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	ZBTB42	B2RXF5	422 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	B4GALT4	O60513	344 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	MAF	O75444	373 aa	Predicted RBP	11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	SLFN14	P0C7P3	912 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	LIG1	P18858	919 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	CYP11B2	P19099	503 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	AFM	P43652	599 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	CDK7	P50613	346 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	SLC12A3	P55017	1021 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	RTP1	P59025	263 aa		11.29	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms