RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 UPF3BQ9BZI7 483 aaKnown RBP5.87□□□□□ -1.47
CLIP1-217ENST00000543205 MCOLN1Q9GZU1 580 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 ENAMQ9NRM1 1142 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 FBXO28Q9NVF7 368 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 PHF24Q9UPV7 400 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 RABGAP1Q9Y3P9 1069 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 VWA5AO00534 786 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 DHX16O60231 1041 aaKnown RBP5.87□□□□□ -1.47
CLIP1-217ENST00000543205 BNIP3LO60238 219 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 PLA2G6O60733 806 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 FKTNO75072 461 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 KIF5BP33176 963 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 SLC16A2P36021 539 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 NASPP49321 788 aaPredicted RBP5.87□□□□□ -1.47
CLIP1-217ENST00000543205 CCNA1P78396 465 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 SP3Q02447 781 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 DNM1Q05193 864 aaKnown RBP5.87□□□□□ -1.47
CLIP1-217ENST00000543205 GRM4Q14833 912 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 FAM110CQ1W6H9 321 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 TTBK2Q6IQ55 1244 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 LBX2Q6XYB7 198 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 RASGRP2Q7LDG7 609 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 C14orf80Q86SX3 495 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 SGMS1Q86VZ5 419 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 CTCFLQ8NI51 663 aaPredicted RBP5.87□□□□□ -1.47
CLIP1-217ENST00000543205 RASGRP4Q8TDF6 673 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 ZNF296Q8WUU4 475 aaPredicted RBP5.87□□□□□ -1.47
CLIP1-217ENST00000543205 NANOS1Q8WY41 292 aaKnown RBP5.87□□□□□ -1.47
CLIP1-217ENST00000543205 BRF1Q92994 677 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 MYL10Q9BUA6 226 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 RBPJLQ9UBG7 517 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 USP20Q9Y2K6 914 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 ATP8A1Q9Y2Q0 1164 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 PTPRFP10586 1907 aa5.87□□□□□ -1.47
CLIP1-217ENST00000543205 ADGRA2Q96PE1 1338 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 MYH4Q9Y623 1939 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 KLF18A0A0U1RQI7 1052 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 KLRF2D3W0D1 207 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 ZBTB43O43298 467 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 NRDCO43847 1150 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 FOSP01100 380 aaPredicted RBP5.86□□□□□ -1.47
CLIP1-217ENST00000543205 MAPTP10636 758 aaKnown RBP5.86□□□□□ -1.47
CLIP1-217ENST00000543205 BCRP11274 1271 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 GNAQP50148 359 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 NEK4P51957 841 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 ERVK-24P63145 666 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 APOBRQ0VD83 1088 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 TROAPQ12815 778 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 ARHGEF6Q15052 776 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 ANKRD1Q15327 319 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 SYDE2Q5VT97 1194 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 ZNF280DQ6N043 979 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 BTNL9Q6UXG8 535 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 MICU3Q86XE3 530 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 RAB11FIP4Q86YS3 637 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 CCDC144CPQ8IYA2 1237 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 CMTR1Q8N1G2 835 aaKnown RBP5.86□□□□□ -1.47
CLIP1-217ENST00000543205 FBXL16Q8N461 479 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 FANCBQ8NB91 859 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 RELTQ969Z4 430 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 ERO1AQ96HE7 468 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 MAP3K14Q99558 947 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 LZTS2Q9BRK4 669 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 KRTAP9-2Q9BYQ4 174 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.86□□□□□ -1.47
CLIP1-217ENST00000543205 VAT1LQ9HCJ6 419 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 TXNRD2Q9NNW7 524 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 BTBD7Q9P203 1132 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 MORF4L1Q9UBU8 362 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 MAD2L2Q9UI95 211 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 INTUQ9ULD6 942 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 ATXN7L1Q9ULK2 861 aaPredicted RBP5.86□□□□□ -1.47
CLIP1-217ENST00000543205 ADAMTS5Q9UNA0 930 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 GOLGA8AA7E2F4 631 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 GOLGA8BA8MQT2 603 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 OPLAHO14841 1288 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 PEX10O60683 326 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 CAND2O75155 1236 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 CNMDO75829 334 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 SCGB1D2O95969 90 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 KRT18P05783 430 aaKnown RBP5.86□□□□□ -1.47
CLIP1-217ENST00000543205 RXRAP19793 462 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 STAT3P40763 770 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 METAP2P50579 478 aaKnown RBP eCLIP5.86□□□□□ -1.47
CLIP1-217ENST00000543205 FCGRTP55899 365 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 SNAP25P60880 206 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 LACTBP83111 547 aaPredicted RBP5.86□□□□□ -1.47
CLIP1-217ENST00000543205 TNP2Q05952 138 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 SFSWAPQ12872 951 aaKnown RBP5.86□□□□□ -1.47
CLIP1-217ENST00000543205 TOB2Q14106 344 aaPredicted RBP5.86□□□□□ -1.47
CLIP1-217ENST00000543205 TMEM132BQ14DG7 1078 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 PPP4R4Q6NUP7 873 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 CCDC174Q6PII3 467 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 APOA5Q6Q788 366 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 ADGRF4Q8IZF3 695 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 CPXCR1Q8N123 301 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 SAMD3Q8N6K7 520 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 CD99L2Q8TCZ2 262 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 TBC1D32Q96NH3 1257 aa5.86□□□□□ -1.47
CLIP1-217ENST00000543205 INO80BQ9C086 356 aaPredicted RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms