RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 RC3H2Q9HBD1 1191 aaKnown RBP5.57□□□□□ -1.52
LIMS1-214ENST00000542845 CYP26B1Q9NR63 512 aa5.57□□□□□ -1.52
LIMS1-214ENST00000542845 IL17RBQ9NRM6 502 aa5.57□□□□□ -1.52
LIMS1-214ENST00000542845 COL20A1Q9P218 1284 aa5.57□□□□□ -1.52
LIMS1-214ENST00000542845 PUF60Q9UHX1 559 aaKnown RBP5.57□□□□□ -1.52
LIMS1-214ENST00000542845 PCDHB7Q9Y5E2 793 aa5.57□□□□□ -1.52
LIMS1-214ENST00000542845 TTC3P53804 2025 aa5.57□□□□□ -1.52
LIMS1-214ENST00000542845 MYH6P13533 1939 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 FSD2A1L4K1 749 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 PRR5-ARHGAP8B1AHC4 643 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 PATL2C9JE40 543 aaKnown RBP5.56□□□□□ -1.52
LIMS1-214ENST00000542845 C3orf80F5H4A9 247 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 M0R2C6 588 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 GPAA1O43292 621 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 DHX16O60231 1041 aaKnown RBP5.56□□□□□ -1.52
LIMS1-214ENST00000542845 CAND2O75155 1236 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 LGALS2P05162 132 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 CT47B1P0C2W7 299 aaPredicted RBP5.56□□□□□ -1.52
LIMS1-214ENST00000542845 SCG2P13521 617 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 ATP5JP18859 108 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 IGBP1P78318 339 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 ARHGAP8P85298 464 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 SP2Q02086 613 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 UBE3AQ05086 875 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 ITIH3Q06033 890 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 PPARAQ07869 468 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 VAC14Q08AM6 782 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 TBC1D8BQ0IIM8 1120 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 TMEM62Q0P6H9 643 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 RRP12Q5JTH9 1297 aaKnown RBP5.56□□□□□ -1.52
LIMS1-214ENST00000542845 FAM26DQ5JW98 314 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 FBXO47Q5MNV8 452 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 ATAT1Q5SQI0 421 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 PDE12Q6L8Q7 609 aaKnown RBP5.56□□□□□ -1.52
LIMS1-214ENST00000542845 BTNL9Q6UXG8 535 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 TMEM184AQ6ZMB5 413 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 RSPH3Q86UC2 560 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 TRIM50Q86XT4 487 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 NPAS4Q8IUM7 802 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 FTSJ3Q8IY81 847 aaKnown RBP5.56□□□□□ -1.52
LIMS1-214ENST00000542845 ZDHHC14Q8IZN3 488 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 COLGALT1Q8NBJ5 622 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 SUMF1Q8NBK3 374 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 DNAJB3Q8WWF6 145 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 RSAD2Q8WXG1 361 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 CASP10Q92851 521 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 GPKOWQ92917 476 aaPredicted RBP eCLIP5.56□□□□□ -1.52
LIMS1-214ENST00000542845 SECISBP2LQ93073 1101 aaKnown RBP5.56□□□□□ -1.52
LIMS1-214ENST00000542845 EMID1Q96A84 441 aaPredicted RBP5.56□□□□□ -1.52
LIMS1-214ENST00000542845 ACSF2Q96CM8 615 aaPredicted RBP5.56□□□□□ -1.52
LIMS1-214ENST00000542845 NECTIN4Q96NY8 510 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 TMEM47Q9BQJ4 181 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 RTKNQ9BST9 563 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 IRX2Q9BZI1 471 aaPredicted RBP5.56□□□□□ -1.52
LIMS1-214ENST00000542845 NACAP1Q9BZK3 213 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 NAPBQ9H115 298 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 ADAM7Q9H2U9 754 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 VAT1LQ9HCJ6 419 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 TYW1Q9NV66 732 aaKnown RBP5.56□□□□□ -1.52
LIMS1-214ENST00000542845 CDY2AQ9Y6F7 541 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 EPG5Q9HCE0 2579 aa5.56□□□□□ -1.52
LIMS1-214ENST00000542845 GVINP1Q7Z2Y8 2422 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.55□□□□□ -1.52
LIMS1-214ENST00000542845 KRBA1A5PL33 1030 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 RNF113AO15541 343 aaKnown RBP5.55□□□□□ -1.52
LIMS1-214ENST00000542845 ZIC2O95409 532 aaPredicted RBP5.55□□□□□ -1.52
LIMS1-214ENST00000542845 EOMESO95936 686 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 HSPD1P10809 573 aaKnown RBP5.55□□□□□ -1.52
LIMS1-214ENST00000542845 GNAT2P19087 354 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 PBX3P40426 434 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 GCGRP47871 477 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 KRT17Q04695 432 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 CSTF1Q05048 431 aaKnown RBP5.55□□□□□ -1.52
LIMS1-214ENST00000542845 NFX1Q12986 1120 aaKnown RBP5.55□□□□□ -1.52
LIMS1-214ENST00000542845 KCNC3Q14003 757 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 TMEM266Q2M3C6 531 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 SWT1Q5T5J6 900 aaKnown RBP5.55□□□□□ -1.52
LIMS1-214ENST00000542845 FAM102BQ5T8I3 360 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 ZKSCAN2Q63HK3 967 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 XRRA1Q6P2D8 792 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 CEP85Q6P2H3 762 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 ADGRD1Q6QNK2 874 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 TMC5Q6UXY8 1006 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 TSHZ1Q6ZSZ6 1077 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 CYFIP1Q7L576 1253 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 MCF2L2Q86YR7 1114 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 C1orf210Q8IVY1 113 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 TRMT2AQ8IZ69 625 aaKnown RBP5.55□□□□□ -1.52
LIMS1-214ENST00000542845 CRIPAKQ8N1N5 446 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 GPR161Q8N6U8 529 aaKnown RBP5.55□□□□□ -1.52
LIMS1-214ENST00000542845 RGS22Q8NE09 1264 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 ST13P5Q8NFI4 369 aaPredicted RBP5.55□□□□□ -1.52
LIMS1-214ENST00000542845 FEZF2Q8TBJ5 459 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 LMBR1Q8WVP7 490 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 ATRIPQ8WXE1 791 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 LINC01599Q8WXQ3 324 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 MRPS27Q92552 414 aaKnown RBP5.55□□□□□ -1.52
LIMS1-214ENST00000542845 ZBTB10Q96DT7 871 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 KIF1BPQ96EK5 621 aa5.55□□□□□ -1.52
LIMS1-214ENST00000542845 SEC62Q99442 399 aaKnown RBP5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms