RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 IGBP1P78318 339 aa19.11■□□□□ 0.65
LIG1-204ENST00000542460 TARBP2Q15633 366 aaKnown RBP19.11■□□□□ 0.65
LIG1-204ENST00000542460 XKR9Q5GH70 373 aa19.11■□□□□ 0.65
LIG1-204ENST00000542460 PRPF38BQ5VTL8 546 aaKnown RBP19.11■□□□□ 0.65
LIG1-204ENST00000542460 CCDC73Q6ZRK6 1079 aa19.11■□□□□ 0.65
LIG1-204ENST00000542460 LMBR1Q8WVP7 490 aa19.11■□□□□ 0.65
LIG1-204ENST00000542460 CEP170P1Q96L14 293 aa19.11■□□□□ 0.65
LIG1-204ENST00000542460 CCDC43Q96MW1 224 aaKnown RBP19.11■□□□□ 0.65
LIG1-204ENST00000542460 CYP26B1Q9NR63 512 aa19.11■□□□□ 0.65
LIG1-204ENST00000542460 A0A087WWV3 80 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 E9PMD0 336 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 PLCG1P19174 1290 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 NPEPPSP55786 919 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 ADAM17P78536 824 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 MTERF2Q49AM1 385 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 RRAGBQ5VZM2 374 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 PLA2G4FQ68DD2 849 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 GDF6Q6KF10 455 aaPredicted RBP19.1■□□□□ 0.65
LIG1-204ENST00000542460 ANKRD33Q7Z3H0 272 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 TOX2Q96NM4 488 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 PANK2Q9BZ23 570 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 EYA4O95677 639 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 RARRES1P49788 294 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 HIC1Q14526 733 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 PTGISQ16647 500 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 LRRC26Q2I0M4 334 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 TPRNQ4KMQ1 711 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 MARCH8Q5T0T0 291 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 KCNK18Q7Z418 384 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 EXOC8Q8IYI6 725 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 PDILTQ8N807 584 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 TRAPPC12Q8WVT3 735 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 SH2D3AQ9BRG2 576 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 BHMT2Q9H2M3 363 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 STK17AQ9UEE5 414 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 TUBE1Q9UJT0 475 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 KCNH3Q9ULD8 1083 aa19.1■□□□□ 0.65
LIG1-204ENST00000542460 TCHHQ07283 1943 aa19.09■□□□□ 0.65
LIG1-204ENST00000542460 FAM237AA0A1B0GTK4 181 aa19.09■□□□□ 0.65
LIG1-204ENST00000542460 A0A1B0GVL5 298 aa19.09■□□□□ 0.65
LIG1-204ENST00000542460 MBLAC1A4D2B0 266 aaPredicted RBP19.09■□□□□ 0.65
LIG1-204ENST00000542460 MAGEB2O15479 319 aa19.09■□□□□ 0.65
LIG1-204ENST00000542460 KLRC1P26715 233 aa19.09■□□□□ 0.65
LIG1-204ENST00000542460 ZNF200P98182 395 aaPredicted RBP19.09■□□□□ 0.65
LIG1-204ENST00000542460 TBC1D8BQ0IIM8 1120 aa19.09■□□□□ 0.65
LIG1-204ENST00000542460 MTHFD1LQ6UB35 978 aa19.09■□□□□ 0.65
LIG1-204ENST00000542460 FAM126BQ8IXS8 530 aa19.09■□□□□ 0.65
LIG1-204ENST00000542460 MRPS27Q92552 414 aaKnown RBP19.09■□□□□ 0.65
LIG1-204ENST00000542460 CEP89Q96ST8 783 aa19.09■□□□□ 0.65
LIG1-204ENST00000542460 PYM1Q9BRP8 204 aaKnown RBP19.09■□□□□ 0.65
LIG1-204ENST00000542460 TRMT13Q9NUP7 481 aaKnown RBP19.09■□□□□ 0.65
LIG1-204ENST00000542460 NOD1Q9Y239 953 aa19.09■□□□□ 0.65
LIG1-204ENST00000542460 A0A087X0B3 334 aa19.08■□□□□ 0.64
LIG1-204ENST00000542460 ARHGEF35A5YM69 484 aa19.08■□□□□ 0.64
LIG1-204ENST00000542460 DCDC2CA8MYV0 355 aa19.08■□□□□ 0.64
LIG1-204ENST00000542460 TLR3O15455 904 aaKnown RBP19.08■□□□□ 0.64
LIG1-204ENST00000542460 TREHO43280 583 aa19.08■□□□□ 0.64
LIG1-204ENST00000542460 B4GALT4O60513 344 aa19.08■□□□□ 0.64
LIG1-204ENST00000542460 PQBP1O60828 265 aaKnown RBP19.08■□□□□ 0.64
LIG1-204ENST00000542460 PRPF40AO75400 957 aaKnown RBP19.08■□□□□ 0.64
LIG1-204ENST00000542460 PFKFB1P16118 471 aa19.08■□□□□ 0.64
LIG1-204ENST00000542460 STAT6P42226 847 aa19.08■□□□□ 0.64
LIG1-204ENST00000542460 RTP1P59025 263 aa19.08■□□□□ 0.64
LIG1-204ENST00000542460 TLE2Q04725 743 aa19.08■□□□□ 0.64
LIG1-204ENST00000542460 TRIM60Q495X7 471 aa19.08■□□□□ 0.64
LIG1-204ENST00000542460 FSIP1Q8NA03 581 aa19.08■□□□□ 0.64
LIG1-204ENST00000542460 IQUBQ8NA54 791 aa19.08■□□□□ 0.64
LIG1-204ENST00000542460 TRPV6Q9H1D0 765 aa19.08■□□□□ 0.64
LIG1-204ENST00000542460 HPSEQ9Y251 543 aa19.08■□□□□ 0.64
LIG1-204ENST00000542460 ATP11BQ9Y2G3 1177 aa19.08■□□□□ 0.64
LIG1-204ENST00000542460 GOLGA6L22H0YM25 854 aa19.07■□□□□ 0.64
LIG1-204ENST00000542460 POLR2DO15514 142 aaKnown RBP19.07■□□□□ 0.64
LIG1-204ENST00000542460 MAFO75444 373 aaPredicted RBP19.07■□□□□ 0.64
LIG1-204ENST00000542460 DGAT1O75907 488 aa19.07■□□□□ 0.64
LIG1-204ENST00000542460 C22orf31O95567 290 aa19.07■□□□□ 0.64
LIG1-204ENST00000542460 CD4P01730 458 aa19.07■□□□□ 0.64
LIG1-204ENST00000542460 PLA2G4BP0C869 781 aa19.07■□□□□ 0.64
LIG1-204ENST00000542460 RFC5P40937 340 aa19.07■□□□□ 0.64
LIG1-204ENST00000542460 RETREG2Q8NC44 543 aa19.07■□□□□ 0.64
LIG1-204ENST00000542460 LRRC15Q8TF66 581 aa19.07■□□□□ 0.64
LIG1-204ENST00000542460 SLC7A3Q8WY07 619 aa19.07■□□□□ 0.64
LIG1-204ENST00000542460 LARP4BQ92615 738 aaKnown RBP19.07■□□□□ 0.64
LIG1-204ENST00000542460 RAD54LQ92698 747 aa19.07■□□□□ 0.64
LIG1-204ENST00000542460 JPH2Q9BR39 696 aaPredicted RBP19.07■□□□□ 0.64
LIG1-204ENST00000542460 HTATIP2Q9BUP3 242 aa19.07■□□□□ 0.64
LIG1-204ENST00000542460 BLOC1S4Q9NUP1 217 aa19.07■□□□□ 0.64
LIG1-204ENST00000542460 MYH9P35579 1960 aaKnown RBP19.07■□□□□ 0.64
LIG1-204ENST00000542460 GADD45BO75293 160 aaPredicted RBP19.06■□□□□ 0.64
LIG1-204ENST00000542460 NDUFA8P51970 172 aa19.06■□□□□ 0.64
LIG1-204ENST00000542460 POLGP54098 1239 aaPredicted RBP19.06■□□□□ 0.64
LIG1-204ENST00000542460 E2F4Q16254 413 aa19.06■□□□□ 0.64
LIG1-204ENST00000542460 NAALADL2Q58DX5 795 aa19.06■□□□□ 0.64
LIG1-204ENST00000542460 TAF2Q6P1X5 1199 aa19.06■□□□□ 0.64
LIG1-204ENST00000542460 PADI6Q6TGC4 694 aa19.06■□□□□ 0.64
LIG1-204ENST00000542460 SERINC5Q86VE9 423 aa19.06■□□□□ 0.64
LIG1-204ENST00000542460 SYT2Q8N9I0 419 aaPredicted RBP19.06■□□□□ 0.64
LIG1-204ENST00000542460 DHX58Q96C10 678 aa19.06■□□□□ 0.64
LIG1-204ENST00000542460 CUEDC2Q9H467 287 aa19.06■□□□□ 0.64
LIG1-204ENST00000542460 DHX33Q9H6R0 707 aaKnown RBP19.06■□□□□ 0.64
LIG1-204ENST00000542460 PCDHA2Q9Y5H9 948 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms