RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 GNAQP50148 359 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 SLC26A2P50443 739 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 ERVFC1P60507 584 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 KRT76Q01546 638 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 TMEM62Q0P6H9 643 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 FUT2Q10981 343 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 DSC3Q14574 896 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 PTPN21Q16825 1174 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 TMEM266Q2M3C6 531 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 SYCE2Q6PIF2 218 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 MTHFD1LQ6UB35 978 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 TMTC3Q6ZXV5 915 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 RBM23Q86U06 439 aaKnown RBP8.36□□□□□ -1.07
YBX3-209ENST00000540747 CMTR1Q8N1G2 835 aaKnown RBP8.36□□□□□ -1.07
YBX3-209ENST00000540747 COLGALT1Q8NBJ5 622 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 EXOC6Q8TAG9 804 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 CRYGNQ8WXF5 182 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 TLE6Q9H808 572 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 AGO4Q9HCK5 861 aaKnown RBP8.36□□□□□ -1.07
YBX3-209ENST00000540747 TLR9Q9NR96 1032 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 PKD2L1Q9P0L9 805 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 SEC63Q9UGP8 760 aaKnown RBP8.36□□□□□ -1.07
YBX3-209ENST00000540747 LZTS1Q9Y250 596 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 NOC2LQ9Y3T9 749 aaKnown RBP8.36□□□□□ -1.07
YBX3-209ENST00000540747 LOXHD1Q8IVV2 1947 aa8.36□□□□□ -1.07
YBX3-209ENST00000540747 CNTNAP5Q8WYK1 1306 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 PLXNA3P51805 1871 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 hCG_1642624A0A1W2PR95 340 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 PROB1E7EW31 1015 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 M0QZ92 97 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 MEIS1O00470 390 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 PER2O15055 1255 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 DHX15O43143 795 aaKnown RBP8.35□□□□□ -1.07
YBX3-209ENST00000540747 PRC1O43663 620 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 C22orf31O95567 290 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 ATP4AP20648 1035 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 AVPR2P30518 371 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 STAT5BP51692 787 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 PLCB3Q01970 1234 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 CEP55Q53EZ4 464 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 FAM102BQ5T8I3 360 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 WWC2Q6AWC2 1192 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 PDE12Q6L8Q7 609 aaKnown RBP8.35□□□□□ -1.07
YBX3-209ENST00000540747 ANKRD54Q6NXT1 300 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 ABHD15Q6UXT9 468 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 SLC24A5Q71RS6 500 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 SGMS1Q86VZ5 419 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 SUGP1Q8IWZ8 645 aaKnown RBP8.35□□□□□ -1.07
YBX3-209ENST00000540747 LINC01465Q8N7H1 131 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 RUFY2Q8WXA3 655 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 TMEM87BQ96K49 555 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 ADAM2Q99965 735 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 AZI2Q9H6S1 392 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 ELAC1Q9H777 363 aaKnown RBP8.35□□□□□ -1.07
YBX3-209ENST00000540747 C1orf112Q9NSG2 853 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 TYW1Q9NV66 732 aaKnown RBP8.35□□□□□ -1.07
YBX3-209ENST00000540747 TRPC6Q9Y210 931 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 PCDHB12Q9Y5F1 795 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 RBM8AQ9Y5S9 174 aaKnown RBP8.35□□□□□ -1.07
YBX3-209ENST00000540747 COL1A2P08123 1366 aa8.35□□□□□ -1.07
YBX3-209ENST00000540747 EP300Q09472 2414 aaPredicted RBP8.34□□□□□ -1.07
YBX3-209ENST00000540747 IGLV3-22A0A075B6J6 115 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 SPDYE3A6NKU9 549 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 TBKBP1A7MCY6 615 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 HIDE1A8MVS5 230 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 HBP1O60381 514 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 GPR32O75388 356 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 PDGFBP01127 241 aaPredicted RBP8.34□□□□□ -1.07
YBX3-209ENST00000540747 CALM1P0DP23 149 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 CALM2P0DP24 149 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 CALM3P0DP25 149 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 RXRAP19793 462 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 KLRC1P26715 233 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 SREBF1P36956 1147 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 CLK2P49760 499 aaKnown RBP8.34□□□□□ -1.07
YBX3-209ENST00000540747 NUBP1P53384 320 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 PPP1R18Q6NYC8 613 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 LRRC55Q6ZSA7 311 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 NIPA1Q7RTP0 329 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 FAM228AQ86W67 206 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 CCDC60Q8IWA6 550 aaPredicted RBP8.34□□□□□ -1.07
YBX3-209ENST00000540747 TMTC2Q8N394 836 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 FANCBQ8NB91 859 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 MRPS27Q92552 414 aaKnown RBP8.34□□□□□ -1.07
YBX3-209ENST00000540747 TNPO1Q92973 898 aaKnown RBP8.34□□□□□ -1.07
YBX3-209ENST00000540747 RPGRIP1Q96KN7 1286 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 CASD1Q96PB1 797 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 NEK1Q96PY6 1258 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 LSG1Q9H089 658 aaKnown RBP8.34□□□□□ -1.07
YBX3-209ENST00000540747 RIC8AQ9NPQ8 531 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 TMEM161AQ9NX61 479 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 ST3GAL5Q9UNP4 418 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 PCDHB7Q9Y5E2 793 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 DMXL1Q9Y485 3027 aa8.34□□□□□ -1.07
YBX3-209ENST00000540747 FRYLO94915 3013 aa8.33□□□□□ -1.08
YBX3-209ENST00000540747 GFRA3O60609 400 aa8.33□□□□□ -1.08
YBX3-209ENST00000540747 PPFIA3O75145 1194 aa8.33□□□□□ -1.08
YBX3-209ENST00000540747 RPS6KA5O75582 802 aa8.33□□□□□ -1.08
YBX3-209ENST00000540747 FOSP01100 380 aaPredicted RBP8.33□□□□□ -1.08
YBX3-209ENST00000540747 FGFR1P11362 822 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms