RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 HIP1RO75146 1068 aa13.94□□□□□ -0.18
SFSWAP-209ENST00000540469 LUC7L3O95232 432 aaKnown RBP13.94□□□□□ -0.18
SFSWAP-209ENST00000540469 CENPTQ96BT3 561 aa13.94□□□□□ -0.18
SFSWAP-209ENST00000540469 DYNLL2Q96FJ2 89 aa13.94□□□□□ -0.18
SFSWAP-209ENST00000540469 ZNF570Q96NI8 536 aa13.94□□□□□ -0.18
SFSWAP-209ENST00000540469 ZNF317Q96PQ6 595 aaPredicted RBP13.94□□□□□ -0.18
SFSWAP-209ENST00000540469 HOMER3Q9NSC5 361 aa13.94□□□□□ -0.18
SFSWAP-209ENST00000540469 BAZ2AQ9UIF9 1905 aaKnown RBP13.94□□□□□ -0.18
SFSWAP-209ENST00000540469 GNA14O95837 355 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 SLC9A1P19634 815 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 TNNI2P48788 182 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 RIPK1Q13546 671 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 GNPTABQ3T906 1256 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 RAD54LQ92698 747 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 TLCD1Q96CP7 247 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 PABPC3Q9H361 631 aaKnown RBP13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 ARPP21Q9UBL0 812 aaPredicted RBP13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 DBR1Q9UK59 544 aaKnown RBP13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 TCP11X1B4DZS4 312 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 RASGRF2O14827 1237 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 FGFR4P22455 802 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 GRIK3Q13003 919 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 C6orf118Q5T5N4 469 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 EPS8L3Q8TE67 593 aaKnown RBP13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 FBF1Q8TES7 1133 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 OSBPL1AQ9BXW6 950 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 TMEM260Q9NX78 707 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 USP15Q9Y4E8 981 aaPredicted RBP13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 RBM5P52756 815 aaKnown RBP eCLIP13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 PSMD2Q13200 908 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 EXOC3L4Q17RC7 722 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 SUSD4Q5VX71 490 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 CCDC65Q8IXS2 484 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 GDAP1Q8TB36 358 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 FBXO25Q8TCJ0 367 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 TRIM7Q9C029 511 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 MTFR1LQ9H019 292 aa13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 BZW2Q9Y6E2 419 aaKnown RBP13.93□□□□□ -0.18
SFSWAP-209ENST00000540469 NR2F2P24468 414 aa13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 NCALDP61601 193 aa13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 ADCY2Q08462 1091 aa13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 NAP1L3Q99457 506 aaPredicted RBP13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 AIPL1Q9NZN9 384 aa13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 HDAC9Q9UKV0 1011 aa13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 AFF2P51816 1311 aa13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 TMEM110-MUSTN1A8MSY1 372 aa13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 CYTH3O43739 400 aa13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 SMIM24O75264 130 aa13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 GRM4Q14833 912 aa13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 ANKRD20A2Q5SQ80 823 aa13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 ANKRD20A1Q5TYW2 823 aa13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 ANKRD20A3Q5VUR7 823 aa13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 ARHGAP27Q6ZUM4 889 aa13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 DZIP1Q86YF9 867 aaKnown RBP13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 PIGBQ92521 554 aa13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 ERP44Q9BS26 406 aa13.92□□□□□ -0.18
SFSWAP-209ENST00000540469 WTIPA6NIX2 430 aaPredicted RBP13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 PPFIA2O75334 1257 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 KRT16P08779 473 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 MSH2P43246 934 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 MMP13P45452 471 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 COPS2P61201 443 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 ZNF268Q14587 947 aaPredicted RBP13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 COBLL1Q53SF7 1204 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 THEMIS2Q5TEJ8 643 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 PIGWQ7Z7B1 504 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 CTNNBL1Q8WYA6 563 aaPredicted RBP13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 PNMA5Q96PV4 448 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 TAOK3Q9H2K8 898 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 ARMCX3Q9UH62 379 aaPredicted RBP13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 MAD2L2Q9UI95 211 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 TDP2O95551 362 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 AGTP01019 485 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 PDHA1P08559 390 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 UCHL3P15374 230 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 MXRA7P84157 204 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 ADCY1Q08828 1119 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 DGKHQ86XP1 1220 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 GBP7Q8N8V2 638 aaPredicted RBP13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 ATXN2LQ8WWM7 1075 aaKnown RBP13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 CEP63Q96MT8 703 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 PAIP2Q9BPZ3 127 aaKnown RBP13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 NR2E1Q9Y466 385 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 STRCP1A6NGW2 1772 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 CAMTA1Q9Y6Y1 1673 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 GFPT2O94808 682 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 NEFHP12036 1026 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 GBP1P32455 592 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 ZNF131P52739 623 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 MECOMQ03112 1051 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 MIS18BP1Q6P0N0 1132 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 KCNK18Q7Z418 384 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 LMNTD2Q8IXW0 634 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 DAGLBQ8NCG7 672 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 L3MBTL3Q96JM7 780 aaPredicted RBP13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 NUDT12Q9BQG2 462 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 SEMA4AQ9H3S1 761 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 ATP8A2Q9NTI2 1148 aa13.91□□□□□ -0.18
SFSWAP-209ENST00000540469 SUCLA2Q9P2R7 463 aaPredicted RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms