RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 ZKSCAN2Q63HK3 967 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 CEP85Q6P2H3 762 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 POTEGQ6S5H5 508 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 SLC24A5Q71RS6 500 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 ITPRIPQ8IWB1 547 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 SAMD3Q8N6K7 520 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 ZBTB44Q8NCP5 570 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 GPR152Q8TDT2 470 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 TMEM117Q9H0C3 514 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 FAM49AQ9H0Q0 323 aaPredicted RBP10.64□□□□□ -0.71
USP28-205ENST00000537706 CWH43Q9H720 699 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 PARD6AQ9NPB6 346 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 SUPT16HQ9Y5B9 1047 aaKnown RBP10.64□□□□□ -0.71
USP28-205ENST00000537706 TRIOO75962 3097 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 OTOGLQ3ZCN5 2332 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 MYO10Q9HD67 2058 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 MYH7BA7E2Y1 1941 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 PLXNA4Q9HCM2 1894 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 KIAA1671Q9BY89 1806 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.64□□□□□ -0.71
USP28-205ENST00000537706 DHX16O60231 1041 aaKnown RBP10.64□□□□□ -0.71
USP28-205ENST00000537706 RETP07949 1114 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 TGM1P22735 817 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 NOVP48745 357 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 NRLP54845 237 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 VSIG10LQ86VR7 867 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 TRMT2AQ8IZ69 625 aaKnown RBP10.64□□□□□ -0.71
USP28-205ENST00000537706 MAML2Q8IZL2 1156 aaPredicted RBP10.64□□□□□ -0.71
USP28-205ENST00000537706 LRRC43Q8N309 656 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 SLC44A3Q8N4M1 653 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 KDF1Q8NAX2 398 aaPredicted RBP10.64□□□□□ -0.71
USP28-205ENST00000537706 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.64□□□□□ -0.71
USP28-205ENST00000537706 PCDHA1Q9Y5I3 950 aa10.64□□□□□ -0.71
USP28-205ENST00000537706 IGSF9BQ9UPX0 1349 aa10.63□□□□□ -0.71
USP28-205ENST00000537706 NCAM2O15394 837 aa10.63□□□□□ -0.71
USP28-205ENST00000537706 HMMRO75330 724 aa10.63□□□□□ -0.71
USP28-205ENST00000537706 STAM2O75886 525 aa10.63□□□□□ -0.71
USP28-205ENST00000537706 STARD6P59095 220 aa10.63□□□□□ -0.71
USP28-205ENST00000537706 SP2Q02086 613 aa10.63□□□□□ -0.71
USP28-205ENST00000537706 FAM102BQ5T8I3 360 aa10.63□□□□□ -0.71
USP28-205ENST00000537706 PRR23CQ6ZRP0 262 aa10.63□□□□□ -0.71
USP28-205ENST00000537706 CYFIP1Q7L576 1253 aa10.63□□□□□ -0.71
USP28-205ENST00000537706 TRIM50Q86XT4 487 aa10.63□□□□□ -0.71
USP28-205ENST00000537706 OSBPL6Q9BZF3 934 aa10.63□□□□□ -0.71
USP28-205ENST00000537706 ELAC1Q9H777 363 aaKnown RBP10.63□□□□□ -0.71
USP28-205ENST00000537706 TMEM161AQ9NX61 479 aa10.63□□□□□ -0.71
USP28-205ENST00000537706 ZNF292O60281 2723 aa10.63□□□□□ -0.71
USP28-205ENST00000537706 EPCAMP16422 314 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 PGM5Q15124 567 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 CYP26C1Q6V0L0 522 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 C15orf39Q6ZRI6 1047 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 NME8Q8N427 588 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 CELF5Q8N6W0 485 aaKnown RBP10.62□□□□□ -0.71
USP28-205ENST00000537706 KBTBD3Q8NAB2 608 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 GIMAP8Q8ND71 665 aaPredicted RBP10.62□□□□□ -0.71
USP28-205ENST00000537706 KIF12Q96FN5 646 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 TMEM169Q96HH4 297 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 ADAM2Q99965 735 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 CELF4Q9BZC1 486 aaKnown RBP10.62□□□□□ -0.71
USP28-205ENST00000537706 FOXQ1Q9C009 403 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 SLC2A4RGQ9NR83 387 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 RGS18Q9NS28 235 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 ERAP1Q9NZ08 941 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 EPS15L1Q9UBC2 864 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 DPP7Q9UHL4 492 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 TNNQ9UQP3 1299 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 KANSL1LA0AUZ9 987 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 MBLAC1A4D2B0 266 aaPredicted RBP10.62□□□□□ -0.71
USP28-205ENST00000537706 HSD17B4P51659 736 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 IGBP1P78318 339 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 CSRP2Q16527 193 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 RSAD2Q8WXG1 361 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 TTC14Q96N46 770 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 MYL10Q9BUA6 226 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 SEMA4GQ9NTN9 838 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 TCP11L1Q9NUJ3 509 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 ANKFY1Q9P2R3 1169 aa10.62□□□□□ -0.71
USP28-205ENST00000537706 ZFHX4Q86UP3 3567 aa10.61□□□□□ -0.71
USP28-205ENST00000537706 KIAA1217Q5T5P2 1943 aa10.61□□□□□ -0.71
USP28-205ENST00000537706 GPR182O15218 404 aa10.61□□□□□ -0.71
USP28-205ENST00000537706 ORC4O43929 436 aa10.61□□□□□ -0.71
USP28-205ENST00000537706 RPS6KA5O75582 802 aa10.61□□□□□ -0.71
USP28-205ENST00000537706 SP4Q02446 784 aa10.61□□□□□ -0.71
USP28-205ENST00000537706 PRKCQQ04759 706 aa10.61□□□□□ -0.71
USP28-205ENST00000537706 CTDSPL2Q05D32 466 aa10.61□□□□□ -0.71
USP28-205ENST00000537706 TRAF1Q13077 416 aa10.61□□□□□ -0.71
USP28-205ENST00000537706 UBXN2BQ14CS0 331 aa10.61□□□□□ -0.71
USP28-205ENST00000537706 KANK3Q6NY19 840 aa10.61□□□□□ -0.71
USP28-205ENST00000537706 RSPO2Q6UXX9 243 aaPredicted RBP10.61□□□□□ -0.71
USP28-205ENST00000537706 EMILIN2Q9BXX0 1053 aa10.61□□□□□ -0.71
USP28-205ENST00000537706 UBA5Q9GZZ9 404 aa10.61□□□□□ -0.71
USP28-205ENST00000537706 CHD6Q8TD26 2715 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 M0R2C6 588 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 FIBPO43427 364 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 GLULP15104 373 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 ALDH7A1P49419 539 aaKnown RBP10.6□□□□□ -0.71
USP28-205ENST00000537706 POLGP54098 1239 aaPredicted RBP10.6□□□□□ -0.71
USP28-205ENST00000537706 KRT76Q01546 638 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 AASDHQ4L235 1098 aaPredicted RBP10.6□□□□□ -0.71
USP28-205ENST00000537706 RRP12Q5JTH9 1297 aaKnown RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms