RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 NFRKBQ6P4R8 1299 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 METTL7BQ6UX53 244 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 MLKLQ8NB16 471 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 SCLYQ96I15 445 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 C16orf70Q9BSU1 422 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 KCNF1Q9H3M0 494 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 HDAC6Q9UBN7 1215 aa13.34□□□□□ -0.27
CLIP1-208ENST00000537004 NOP56O00567 594 aaKnown RBP13.33□□□□□ -0.28
CLIP1-208ENST00000537004 NEMFO60524 1076 aa13.33□□□□□ -0.28
CLIP1-208ENST00000537004 SLC34A2O95436 690 aa13.33□□□□□ -0.28
CLIP1-208ENST00000537004 HOXD8P13378 290 aaPredicted RBP13.33□□□□□ -0.28
CLIP1-208ENST00000537004 KCNA2P16389 499 aa13.33□□□□□ -0.28
CLIP1-208ENST00000537004 CDC25AP30304 524 aa13.33□□□□□ -0.28
CLIP1-208ENST00000537004 ZNF200P98182 395 aaPredicted RBP13.33□□□□□ -0.28
CLIP1-208ENST00000537004 DPYDQ12882 1025 aa13.33□□□□□ -0.28
CLIP1-208ENST00000537004 MTMR1Q13613 665 aa13.33□□□□□ -0.28
CLIP1-208ENST00000537004 HIC1Q14526 733 aa13.33□□□□□ -0.28
CLIP1-208ENST00000537004 PDXDC2PQ6P474 469 aa13.33□□□□□ -0.28
CLIP1-208ENST00000537004 CCDC186Q7Z3E2 898 aa13.33□□□□□ -0.28
CLIP1-208ENST00000537004 NLRX1Q86UT6 975 aa13.33□□□□□ -0.28
CLIP1-208ENST00000537004 NAP1L5Q96NT1 182 aaPredicted RBP13.33□□□□□ -0.28
CLIP1-208ENST00000537004 GPR20Q99678 358 aa13.33□□□□□ -0.28
CLIP1-208ENST00000537004 HSD3B7Q9H2F3 369 aa13.33□□□□□ -0.28
CLIP1-208ENST00000537004 OR52Z1P0C646 297 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 CASP1P29466 404 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 PSEN2P49810 448 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 ORC2Q13416 577 aaPredicted RBP13.32□□□□□ -0.28
CLIP1-208ENST00000537004 NEDD9Q14511 834 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 MFSD10Q14728 455 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.32□□□□□ -0.28
CLIP1-208ENST00000537004 JADE2Q9NQC1 790 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 DACH1Q9UI36 760 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 VCANP13611 3396 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 HAS3O00219 553 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 LGALS2P05162 132 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 ARP10275 920 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 ARHGAP4P98171 946 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 KARSQ15046 597 aaKnown RBP13.32□□□□□ -0.28
CLIP1-208ENST00000537004 PTGISQ16647 500 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 GPRASP2Q96D09 838 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 VWCEQ96DN2 955 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 GSDMAQ96QA5 445 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 SENP7Q9BQF6 1050 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 MXRA8Q9BRK3 442 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 DISC1Q9NRI5 854 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 KCNH7Q9NS40 1196 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 NOD1Q9Y239 953 aa13.32□□□□□ -0.28
CLIP1-208ENST00000537004 PP2D1A8MPX8 630 aa13.31□□□□□ -0.28
CLIP1-208ENST00000537004 FAM86B1E9PN63 330 aa13.31□□□□□ -0.28
CLIP1-208ENST00000537004 H3BRB1 525 aa13.31□□□□□ -0.28
CLIP1-208ENST00000537004 FOSP01100 380 aaPredicted RBP13.31□□□□□ -0.28
CLIP1-208ENST00000537004 FAM86B2P0C5J1 330 aa13.31□□□□□ -0.28
CLIP1-208ENST00000537004 SUPT20HL2P0C7V6 817 aa13.31□□□□□ -0.28
CLIP1-208ENST00000537004 SREBF1P36956 1147 aa13.31□□□□□ -0.28
CLIP1-208ENST00000537004 STAT6P42226 847 aa13.31□□□□□ -0.28
CLIP1-208ENST00000537004 CEP55Q53EZ4 464 aa13.31□□□□□ -0.28
CLIP1-208ENST00000537004 UTP14CQ5TAP6 766 aaKnown RBP13.31□□□□□ -0.28
CLIP1-208ENST00000537004 Q7L0L9 218 aa13.31□□□□□ -0.28
CLIP1-208ENST00000537004 TMEM199Q8N511 208 aa13.31□□□□□ -0.28
CLIP1-208ENST00000537004 C7orf31Q8N865 590 aa13.31□□□□□ -0.28
CLIP1-208ENST00000537004 STAMQ92783 540 aa13.31□□□□□ -0.28
CLIP1-208ENST00000537004 RNPC3Q96LT9 517 aaKnown RBP13.31□□□□□ -0.28
CLIP1-208ENST00000537004 SEZ6LQ9BYH1 1024 aa13.31□□□□□ -0.28
CLIP1-208ENST00000537004 XPO4Q9C0E2 1151 aaKnown RBP13.31□□□□□ -0.28
CLIP1-208ENST00000537004 CCSER1Q9C0I3 900 aa13.31□□□□□ -0.28
CLIP1-208ENST00000537004 TUT1Q9H6E5 874 aaKnown RBP13.31□□□□□ -0.28
CLIP1-208ENST00000537004 IFNKQ9P0W0 207 aa13.31□□□□□ -0.28
CLIP1-208ENST00000537004 GTF2IRD1Q9UHL9 959 aa13.31□□□□□ -0.28
CLIP1-208ENST00000537004 ATP1A3P13637 1013 aa13.3□□□□□ -0.28
CLIP1-208ENST00000537004 UBA7P41226 1012 aa13.3□□□□□ -0.28
CLIP1-208ENST00000537004 AP3B2Q13367 1082 aa13.3□□□□□ -0.28
CLIP1-208ENST00000537004 TMEM240Q5SV17 173 aa13.3□□□□□ -0.28
CLIP1-208ENST00000537004 FAM109BQ6ICB4 259 aaPredicted RBP13.3□□□□□ -0.28
CLIP1-208ENST00000537004 ZNF365Q70YC5 407 aa13.3□□□□□ -0.28
CLIP1-208ENST00000537004 CRYGNQ8WXF5 182 aa13.3□□□□□ -0.28
CLIP1-208ENST00000537004 DHX38Q92620 1227 aaKnown RBP13.3□□□□□ -0.28
CLIP1-208ENST00000537004 WNT8BQ93098 351 aa13.3□□□□□ -0.28
CLIP1-208ENST00000537004 AK8Q96MA6 479 aa13.3□□□□□ -0.28
CLIP1-208ENST00000537004 MTRQ99707 1265 aa13.3□□□□□ -0.28
CLIP1-208ENST00000537004 EHMT1Q9H9B1 1298 aa13.3□□□□□ -0.28
CLIP1-208ENST00000537004 GTPBP6O43824 516 aaPredicted RBP13.3□□□□□ -0.28
CLIP1-208ENST00000537004 FANCCQ00597 558 aa13.3□□□□□ -0.28
CLIP1-208ENST00000537004 ITGB3BPQ13352 177 aaPredicted RBP13.3□□□□□ -0.28
CLIP1-208ENST00000537004 POTEDQ86YR6 584 aa13.3□□□□□ -0.28
CLIP1-208ENST00000537004 RASSF8Q8NHQ8 419 aa13.3□□□□□ -0.28
CLIP1-208ENST00000537004 KATNAL1Q9BW62 490 aa13.3□□□□□ -0.28
CLIP1-208ENST00000537004 GLT8D2Q9H1C3 349 aa13.3□□□□□ -0.28
CLIP1-208ENST00000537004 FANCLQ9NW38 375 aa13.3□□□□□ -0.28
CLIP1-208ENST00000537004 GSTTP1A0A1W2PQM5 241 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 MEIS1O00470 390 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 EDIL3O43854 480 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 ERCC5P28715 1186 aaPredicted RBP13.29□□□□□ -0.28
CLIP1-208ENST00000537004 TCF7P36402 384 aaPredicted RBP13.29□□□□□ -0.28
CLIP1-208ENST00000537004 ZNF76P36508 570 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 PPIGQ13427 754 aaKnown RBP eCLIP13.29□□□□□ -0.282e-7■□□□□ 8.5
CLIP1-208ENST00000537004 RRAGBQ5VZM2 374 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 OTOP2Q7RTS6 562 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 DEFB128Q7Z7B8 93 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 SESTD1Q86VW0 696 aa13.29□□□□□ -0.28
CLIP1-208ENST00000537004 CDHR1Q96JP9 859 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms