RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 SYNE3Q6ZMZ3 975 aa12.78□□□□□ -0.36
CLSTN3-206ENST00000535668 HEATR3Q7Z4Q2 680 aa12.78□□□□□ -0.36
CLSTN3-206ENST00000535668 SMAP1Q8IYB5 467 aaPredicted RBP12.78□□□□□ -0.36
CLSTN3-206ENST00000535668 LINC01465Q8N7H1 131 aa12.78□□□□□ -0.36
CLSTN3-206ENST00000535668 PIBF1Q8WXW3 757 aa12.78□□□□□ -0.36
CLSTN3-206ENST00000535668 BBXQ8WY36 941 aaPredicted RBP12.78□□□□□ -0.36
CLSTN3-206ENST00000535668 SUSD6Q92537 303 aa12.78□□□□□ -0.36
CLSTN3-206ENST00000535668 NEK1Q96PY6 1258 aa12.78□□□□□ -0.36
CLSTN3-206ENST00000535668 ANO3Q9BYT9 981 aa12.78□□□□□ -0.36
CLSTN3-206ENST00000535668 CD207Q9UJ71 328 aa12.78□□□□□ -0.36
CLSTN3-206ENST00000535668 RIF1Q5UIP0 2472 aaKnown RBP12.78□□□□□ -0.36
CLSTN3-206ENST00000535668 CCDC196A0A1B0GTZ2 297 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 SMCO2A6NFE2 343 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 FAM86B1E9PN63 330 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 FSCN2O14926 492 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 GPR182O15218 404 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 FAM86B2P0C5J1 330 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 ATP4AP20648 1035 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 KLRC1P26715 233 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 SSTR3P32745 418 aaPredicted RBP12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 ADCY7P51828 1080 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 CRYBB1P53674 252 aaPredicted RBP12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 PLCB3Q01970 1234 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 DSC3Q14574 896 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 PFKFB3Q16875 520 aaPredicted RBP12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 FAM160B1Q5W0V3 765 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 MICU3Q86XE3 530 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 FAM177A1Q8N128 213 aaPredicted RBP12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 KLHL23Q8NBE8 558 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 EDAQ92838 391 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 TMEM161AQ9NX61 479 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 BRPF3Q9ULD4 1205 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 TRPC6Q9Y210 931 aa12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 V9GY48 417 aaPredicted RBP12.77□□□□□ -0.37
CLSTN3-206ENST00000535668 LOXHD1Q8IVV2 1947 aa12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 IPO5O00410 1097 aaKnown RBP12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 MAGEB2O15479 319 aa12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 ZBTB43O43298 467 aa12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 GPR32O75388 356 aa12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 C22orf31O95567 290 aa12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 RXRAP19793 462 aa12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 NAPAP54920 295 aa12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 SETQ01105 290 aaPredicted RBP12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 RTN1Q16799 776 aa12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 CCDC60Q8IWA6 550 aaPredicted RBP12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 TMEM40Q8WWA1 233 aa12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 MFSD14AQ96MC6 490 aa12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 TRAIPQ9BWF2 469 aa12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 ALG13Q9NP73 1137 aaKnown RBP12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 AAASQ9NRG9 546 aa12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 FNDC1Q4ZHG4 1894 aaPredicted RBP12.76□□□□□ -0.37
CLSTN3-206ENST00000535668 hCG_1642624A0A1W2PR95 340 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 CARNS1A5YM72 827 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 FAM86C2PA6NEL3 165 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 RBAK-RBAKDNI3L0D1 243 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 EPB41L2O43491 1005 aaKnown RBP12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 GLP2RO95838 553 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 MIS18BP1Q6P0N0 1132 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 RNF135Q8IUD6 432 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 RASEFQ8IZ41 740 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 POF1BQ8WVV4 589 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 LENG9Q96B70 501 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 PRRX2Q99811 253 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 KIAA1671Q9BY89 1806 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 FAM49AQ9H0Q0 323 aaPredicted RBP12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 ZNF302Q9NR11 478 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 ST3GAL5Q9UNP4 418 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 CEP131Q9UPN4 1083 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 NOC2LQ9Y3T9 749 aaKnown RBP12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 PCDHB12Q9Y5F1 795 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 PCDHA10Q9Y5I2 948 aa12.75□□□□□ -0.37
CLSTN3-206ENST00000535668 EVPLQ92817 2033 aa12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 HOXA2O43364 376 aa12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 PRPF3O43395 683 aaKnown RBP12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 MGEA5O60502 916 aa12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 RPS6KA5O75582 802 aa12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 CDC27P30260 824 aa12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 NUBP1P53384 320 aa12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 IGBP1P78318 339 aa12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 CDC42EP1Q00587 391 aa12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 NTRK3Q16288 839 aa12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 CCDC82Q8N4S0 544 aa12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 CCDC12Q8WUD4 166 aaPredicted RBP12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 TRAPPC12Q8WVT3 735 aa12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 FAM167AQ96KS9 214 aa12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 RIT2Q99578 217 aa12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 PHF7Q9BWX1 381 aaPredicted RBP12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 CWH43Q9H720 699 aa12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 ANO2Q9NQ90 1003 aa12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 PCDHB7Q9Y5E2 793 aa12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 MYH9P35579 1960 aaKnown RBP12.74□□□□□ -0.37
CLSTN3-206ENST00000535668 PTPRZ1P23471 2315 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-206ENST00000535668 ZFHX2Q9C0A1 2572 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-206ENST00000535668 LINC01565O15544 149 aa12.73□□□□□ -0.37
CLSTN3-206ENST00000535668 EDIL3O43854 480 aa12.73□□□□□ -0.37
CLSTN3-206ENST00000535668 HOXB8P17481 243 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-206ENST00000535668 GNA11P29992 359 aa12.73□□□□□ -0.37
CLSTN3-206ENST00000535668 GTF2F1P35269 517 aaKnown RBP eCLIP12.73□□□□□ -0.37
CLSTN3-206ENST00000535668 USP11P51784 963 aa12.73□□□□□ -0.37
CLSTN3-206ENST00000535668 NHLH1Q02575 133 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms