RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 MTFR1LQ9H019 292 aa15.48■□□□□ 0.07
USP48-213ENST00000529637 TSKSQ9UJT2 592 aa15.48■□□□□ 0.07
USP48-213ENST00000529637 ITGA4P13612 1032 aa15.48■□□□□ 0.07
USP48-213ENST00000529637 PNMA8AQ86V59 439 aaPredicted RBP15.48■□□□□ 0.07
USP48-213ENST00000529637 NAV1Q8NEY1 1877 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 NPHP3-ACAD11A0A0J9YXS1 232 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 NOL4O94818 638 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 SLC8A1P32418 973 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 SNAP25P60880 206 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 COASYQ13057 564 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 ECM1Q16610 540 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 C15orf52Q6ZUT6 534 aaKnown RBP15.47■□□□□ 0.07
USP48-213ENST00000529637 LRRC27Q9C0I9 530 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 EME2A4GXA9 379 aaPredicted RBP15.47■□□□□ 0.07
USP48-213ENST00000529637 SART1O43290 800 aaKnown RBP15.47■□□□□ 0.07
USP48-213ENST00000529637 SMARCA1P28370 1054 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 TNNC1P63316 161 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 KRT71Q3SY84 523 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 TBC1D1Q86TI0 1168 aaPredicted RBP15.47■□□□□ 0.07
USP48-213ENST00000529637 GPBP1Q86WP2 473 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 ZNF219Q9P2Y4 722 aaPredicted RBP15.47■□□□□ 0.07
USP48-213ENST00000529637 AMACRQ9UHK6 382 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 GGT7Q9UJ14 662 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 MAST2Q6P0Q8 1798 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 GAKO14976 1311 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 MYH7BA7E2Y1 1941 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 POTEB3A0JP26 581 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 POTECB2RU33 542 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 hCG_1984214I3L0E3 225 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 PPEF1O14829 653 aaPredicted RBP15.47■□□□□ 0.07
USP48-213ENST00000529637 CEP104O60308 925 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 BUB1BO60566 1050 aaPredicted RBP15.47■□□□□ 0.07
USP48-213ENST00000529637 PPP1R11O60927 126 aaPredicted RBP15.47■□□□□ 0.07
USP48-213ENST00000529637 DNAJC8O75937 253 aaPredicted RBP15.47■□□□□ 0.07
USP48-213ENST00000529637 TRIM37O94972 964 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 LRRC63Q05C16 580 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 POTEBQ6S5H4 581 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 ZNF713Q8N859 430 aaPredicted RBP15.47■□□□□ 0.07
USP48-213ENST00000529637 FAM163AQ96GL9 167 aaPredicted RBP15.47■□□□□ 0.07
USP48-213ENST00000529637 CELF4Q9BZC1 486 aaKnown RBP15.47■□□□□ 0.07
USP48-213ENST00000529637 TMX4Q9H1E5 349 aaPredicted RBP15.47■□□□□ 0.07
USP48-213ENST00000529637 RIC8AQ9NPQ8 531 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 PCDHGC5Q9Y5F6 944 aa15.47■□□□□ 0.07
USP48-213ENST00000529637 RBAK-RBAKDNI3L0D1 243 aa15.46■□□□□ 0.07
USP48-213ENST00000529637 STAT3P40763 770 aa15.46■□□□□ 0.07
USP48-213ENST00000529637 POLR2FP61218 127 aaKnown RBP15.46■□□□□ 0.07
USP48-213ENST00000529637 PDIA5Q14554 519 aa15.46■□□□□ 0.07
USP48-213ENST00000529637 SAMD1Q6SPF0 538 aaPredicted RBP15.46■□□□□ 0.07
USP48-213ENST00000529637 PNMA2Q9UL42 364 aa15.46■□□□□ 0.07
USP48-213ENST00000529637 PCDHA1Q9Y5I3 950 aa15.46■□□□□ 0.07
USP48-213ENST00000529637 SSU72P8A0A1W2PR75 194 aa15.46■□□□□ 0.07
USP48-213ENST00000529637 TULP1O00294 542 aaPredicted RBP15.46■□□□□ 0.07
USP48-213ENST00000529637 NFIAQ12857 509 aa15.46■□□□□ 0.07
USP48-213ENST00000529637 RAPGEF1Q13905 1077 aa15.46■□□□□ 0.07
USP48-213ENST00000529637 FAM133BQ5BKY9 247 aaKnown RBP15.46■□□□□ 0.07
USP48-213ENST00000529637 FAM83BQ5T0W9 1011 aa15.46■□□□□ 0.07
USP48-213ENST00000529637 LSM14BQ9BX40 385 aaKnown RBP15.46■□□□□ 0.07
USP48-213ENST00000529637 KDM4CQ9H3R0 1056 aa15.46■□□□□ 0.07
USP48-213ENST00000529637 EP400Q96L91 3159 aa15.46■□□□□ 0.06
USP48-213ENST00000529637 FAM170AA1A519 330 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 CCT8L1PA6NM43 557 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 CTNND1O60716 968 aaKnown RBP15.45■□□□□ 0.06
USP48-213ENST00000529637 PAEPP09466 180 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 INHBEP58166 350 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 FKBP3Q00688 224 aaKnown RBP15.45■□□□□ 0.06
USP48-213ENST00000529637 BIRC3Q13489 604 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 CRY2Q49AN0 593 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 SLC9C1Q4G0N8 1177 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 FMNL3Q8IVF7 1028 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 CCDC65Q8IXS2 484 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 CERS5Q8N5B7 392 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 C3orf20Q8ND61 904 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 TRIM31Q9BZY9 425 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 DPH5Q9H2P9 285 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.45■□□□□ 0.06
USP48-213ENST00000529637 COL4A3BPQ9Y5P4 624 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 ZBTB5O15062 677 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 CLSTN1O94985 981 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 ANP32DO95626 131 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 PEX19P40855 299 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 ORC2Q13416 577 aaPredicted RBP15.45■□□□□ 0.06
USP48-213ENST00000529637 SHROOM1Q2M3G4 852 aaPredicted RBP15.45■□□□□ 0.06
USP48-213ENST00000529637 USH1GQ495M9 461 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 RUFY4Q6ZNE9 571 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 KIAA0825Q8IV33 1275 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 SCFD2Q8WU76 684 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 SPDL1Q96EA4 605 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 AGAP1Q9UPQ3 857 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 MEIS1O00470 390 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 CAND2O75155 1236 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 DHX9Q08211 1270 aaKnown RBP15.45■□□□□ 0.06
USP48-213ENST00000529637 SFMBT2Q5VUG0 894 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 LRRC55Q6ZSA7 311 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 FAM133AQ8N9E0 248 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 HAS1Q92839 578 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 LRRC45Q96CN5 670 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 CHMP6Q96FZ7 201 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 XPO6Q96QU8 1125 aaKnown RBP15.45■□□□□ 0.06
USP48-213ENST00000529637 FGFBP2Q9BYJ0 223 aa15.45■□□□□ 0.06
USP48-213ENST00000529637 BTAF1O14981 1849 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms