RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 MGAT3Q09327 533 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 NR5A1Q13285 461 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 LPIN1Q14693 890 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 INF2Q27J81 1249 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 MOXD1Q6UVY6 613 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 NEK8Q86SG6 692 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 PLA2G4DQ86XP0 818 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 FIBCD1Q8N539 461 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 BANK1Q8NDB2 785 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 OXER1Q8TDS5 423 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 DNAJB3Q8WWF6 145 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 SDF4Q9BRK5 362 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 EPHX3Q9H6B9 360 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 AZI2Q9H6S1 392 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 KCNH7Q9NS40 1196 aa11.45□□□□□ -0.58
VPS28-204ENST00000526054 NFASCO94856 1347 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 IGLV3-22A0A075B6J6 115 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 FAM86B1E9PN63 330 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 RPLP2P05387 115 aaKnown RBP11.44□□□□□ -0.58
VPS28-204ENST00000526054 FAM86B2P0C5J1 330 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 IL9P15248 144 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 GCFC2P16383 781 aaKnown RBP11.44□□□□□ -0.58
VPS28-204ENST00000526054 PDCP20941 246 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 PLA2G5P39877 138 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 MRPS6P82932 125 aaKnown RBP11.44□□□□□ -0.58
VPS28-204ENST00000526054 LETM2Q2VYF4 491 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 PRR16Q569H4 304 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 TCEAL5Q5H9L2 206 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 TMEM31Q5JXX7 168 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 FBXO47Q5MNV8 452 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 PTCRAQ6ISU1 281 aaPredicted RBP11.44□□□□□ -0.58
VPS28-204ENST00000526054 TSHZ1Q6ZSZ6 1077 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 CYP2W1Q8TAV3 490 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 TNFRSF25Q93038 417 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 C11orf84Q9BUA3 381 aaPredicted RBP11.44□□□□□ -0.58
VPS28-204ENST00000526054 FAM49AQ9H0Q0 323 aaPredicted RBP11.44□□□□□ -0.58
VPS28-204ENST00000526054 FOXP1Q9H334 677 aaPredicted RBP11.44□□□□□ -0.58
VPS28-204ENST00000526054 NSUN3Q9H649 340 aaKnown RBP11.44□□□□□ -0.58
VPS28-204ENST00000526054 AGO4Q9HCK5 861 aaKnown RBP11.44□□□□□ -0.58
VPS28-204ENST00000526054 SLC9A2Q9UBY0 812 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 TCEAL9Q9UHQ7 104 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 TRPC6Q9Y210 931 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 RWDD3Q9Y3V2 267 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 CDY2AQ9Y6F7 541 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 MYO7AQ13402 2215 aa11.44□□□□□ -0.58
VPS28-204ENST00000526054 TTC3P53804 2025 aa11.43□□□□□ -0.58
VPS28-204ENST00000526054 RRN3P2A6NIE6 340 aa11.43□□□□□ -0.58
VPS28-204ENST00000526054 C5orf67F2Z3F1 127 aa11.43□□□□□ -0.58
VPS28-204ENST00000526054 H3BQ06 376 aaPredicted RBP11.43□□□□□ -0.58
VPS28-204ENST00000526054 M0QZ92 97 aa11.43□□□□□ -0.58
VPS28-204ENST00000526054 TDP2O95551 362 aa11.43□□□□□ -0.58
VPS28-204ENST00000526054 ARP10275 920 aa11.43□□□□□ -0.58
VPS28-204ENST00000526054 SSTR3P32745 418 aaPredicted RBP11.43□□□□□ -0.58
VPS28-204ENST00000526054 PUS10Q3MIT2 529 aaKnown RBP11.43□□□□□ -0.58
VPS28-204ENST00000526054 MARCH8Q5T0T0 291 aa11.43□□□□□ -0.58
VPS28-204ENST00000526054 LARP1BQ659C4 914 aaKnown RBP11.43□□□□□ -0.58
VPS28-204ENST00000526054 EP400NLQ6ZTU2 488 aa11.43□□□□□ -0.58
VPS28-204ENST00000526054 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.43□□□□□ -0.58
VPS28-204ENST00000526054 KHSRPQ92945 711 aaKnown RBP eCLIP11.43□□□□□ -0.58
VPS28-204ENST00000526054 ZBTB10Q96DT7 871 aa11.43□□□□□ -0.58
VPS28-204ENST00000526054 ZNF577Q9BSK1 485 aa11.43□□□□□ -0.58
VPS28-204ENST00000526054 LRFN3Q9BTN0 628 aa11.43□□□□□ -0.58
VPS28-204ENST00000526054 RC3H2Q9HBD1 1191 aaKnown RBP11.43□□□□□ -0.58
VPS28-204ENST00000526054 CD320Q9NPF0 282 aa11.43□□□□□ -0.58
VPS28-204ENST00000526054 DDX25Q9UHL0 483 aaKnown RBP11.43□□□□□ -0.58
VPS28-204ENST00000526054 HCN4Q9Y3Q4 1203 aa11.43□□□□□ -0.58
VPS28-204ENST00000526054 RBM19Q9Y4C8 960 aaKnown RBP11.43□□□□□ -0.58
VPS28-204ENST00000526054 CYP3A7-CYP3A51PA0A087WV96 503 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 FAM86C2PA6NEL3 165 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 FAM205CA6NFA0 338 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 IPO5O00410 1097 aaKnown RBP11.42□□□□□ -0.58
VPS28-204ENST00000526054 CCNT1O60563 726 aaKnown RBP11.42□□□□□ -0.58
VPS28-204ENST00000526054 INSRRP14616 1297 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 CYP3A7P24462 503 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 CD52P31358 61 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 ACTR2P61160 394 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 BTG3Q14201 252 aaPredicted RBP11.42□□□□□ -0.58
VPS28-204ENST00000526054 BECN1Q14457 450 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 Q4G0T1 1027 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 EARS2Q5JPH6 523 aaKnown RBP11.42□□□□□ -0.58
VPS28-204ENST00000526054 IER5Q5VY09 327 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 MCTP1Q6DN14 999 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 PPP4R3AQ6IN85 833 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 NOSTRINQ8IVI9 506 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 FAM178BQ8IXR5 827 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 GJD3Q8N144 294 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 NEK9Q8TD19 979 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 TNPO1Q92973 898 aaKnown RBP11.42□□□□□ -0.58
VPS28-204ENST00000526054 PABPC5Q96DU9 382 aaKnown RBP11.42□□□□□ -0.58
VPS28-204ENST00000526054 FAM122AQ96E09 287 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 MBOAT7Q96N66 472 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 PCYT2Q99447 389 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 LMAN2LQ9H0V9 348 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 TBC1D22BQ9NU19 505 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 FOXD4L1Q9NU39 408 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 CLDND1Q9NY35 253 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 NOL7Q9UMY1 257 aaKnown RBP11.42□□□□□ -0.58
VPS28-204ENST00000526054 TRPV2Q9Y5S1 764 aa11.42□□□□□ -0.58
VPS28-204ENST00000526054 MYH9P35579 1960 aaKnown RBP11.41□□□□□ -0.58
VPS28-204ENST00000526054 WDR81Q562E7 1941 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms