RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 NIFKQ9BYG3 293 aaKnown RBP18.15■□□□□ 0.5
LSM1-204ENST00000522515 DBR1Q9UK59 544 aaKnown RBP18.15■□□□□ 0.5
LSM1-204ENST00000522515 GRIN2DO15399 1336 aa18.14■□□□□ 0.49
LSM1-204ENST00000522515 ZBTB42B2RXF5 422 aa18.14■□□□□ 0.49
LSM1-204ENST00000522515 PLA2G4BP0C869 781 aa18.14■□□□□ 0.49
LSM1-204ENST00000522515 INSRRP14616 1297 aa18.14■□□□□ 0.49
LSM1-204ENST00000522515 DHX8Q14562 1220 aaKnown RBP18.14■□□□□ 0.49
LSM1-204ENST00000522515 TARBP2Q15633 366 aaKnown RBP18.14■□□□□ 0.49
LSM1-204ENST00000522515 NBPF20Q3BBV1 942 aa18.14■□□□□ 0.49
LSM1-204ENST00000522515 MTERF2Q49AM1 385 aa18.14■□□□□ 0.49
LSM1-204ENST00000522515 XKR9Q5GH70 373 aa18.14■□□□□ 0.49
LSM1-204ENST00000522515 TRAPPC12Q8WVT3 735 aa18.14■□□□□ 0.49
LSM1-204ENST00000522515 VTI1AQ96AJ9 217 aa18.14■□□□□ 0.49
LSM1-204ENST00000522515 CEP170P1Q96L14 293 aa18.14■□□□□ 0.49
LSM1-204ENST00000522515 CYP26B1Q9NR63 512 aa18.14■□□□□ 0.49
LSM1-204ENST00000522515 DACT1Q9NYF0 836 aa18.14■□□□□ 0.49
LSM1-204ENST00000522515 SSBP05455 408 aaKnown RBP eCLIP18.13■□□□□ 0.49
LSM1-204ENST00000522515 SLFN14P0C7P3 912 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 SMIM10L2AP0DMW4 78 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 SMIM10L2BP0DMW5 78 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 SLC12A3P55017 1021 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 KRBA2Q6ZNG9 492 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 SYT2Q8N9I0 419 aaPredicted RBP18.13■□□□□ 0.49
LSM1-204ENST00000522515 STAMQ92783 540 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 CEP89Q96ST8 783 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 CUEDC2Q9H467 287 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 ARID2Q68CP9 1835 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 ARHGEF35A5YM69 484 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 IGBP1P78318 339 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 PPFIA1Q13136 1202 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 ITGA7Q13683 1181 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 HIC1Q14526 733 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 CEP57L1Q8IYX8 460 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 C7orf31Q8N865 590 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 ANKLE1Q8NAG6 615 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 DIS3LQ8TF46 1054 aaKnown RBP18.13■□□□□ 0.49
LSM1-204ENST00000522515 CCDC43Q96MW1 224 aaKnown RBP18.13■□□□□ 0.49
LSM1-204ENST00000522515 MTRQ99707 1265 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 STARD7Q9NQZ5 370 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 SETD4Q9NVD3 440 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 HDAC6Q9UBN7 1215 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 USP25Q9UHP3 1055 aa18.13■□□□□ 0.49
LSM1-204ENST00000522515 LOXHD1Q8IVV2 1947 aa18.12■□□□□ 0.49
LSM1-204ENST00000522515 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.12■□□□□ 0.49
LSM1-204ENST00000522515 GRIK4Q16099 956 aa18.12■□□□□ 0.49
LSM1-204ENST00000522515 ZNF484Q5JVG2 852 aa18.12■□□□□ 0.49
LSM1-204ENST00000522515 SV2BQ7L1I2 683 aa18.12■□□□□ 0.49
LSM1-204ENST00000522515 GRAMD1CQ8IYS0 662 aa18.12■□□□□ 0.49
LSM1-204ENST00000522515 CNNM3Q8NE01 707 aa18.12■□□□□ 0.49
LSM1-204ENST00000522515 KBTBD4Q9NVX7 518 aa18.12■□□□□ 0.49
LSM1-204ENST00000522515 KIAA0100Q14667 2235 aaKnown RBP18.11■□□□□ 0.49
LSM1-204ENST00000522515 COL1A2P08123 1366 aa18.11■□□□□ 0.49
LSM1-204ENST00000522515 NRCAMQ92823 1304 aa18.11■□□□□ 0.49
LSM1-204ENST00000522515 KINO60870 393 aaKnown RBP18.11■□□□□ 0.49
LSM1-204ENST00000522515 MBD3O95983 291 aa18.11■□□□□ 0.49
LSM1-204ENST00000522515 PTMSP20962 102 aa18.11■□□□□ 0.49
LSM1-204ENST00000522515 AFMP43652 599 aa18.11■□□□□ 0.49
LSM1-204ENST00000522515 FAM47CQ5HY64 1035 aa18.11■□□□□ 0.49
LSM1-204ENST00000522515 MARCH8Q5T0T0 291 aa18.11■□□□□ 0.49
LSM1-204ENST00000522515 RINT1Q6NUQ1 792 aa18.11■□□□□ 0.49
LSM1-204ENST00000522515 PADI6Q6TGC4 694 aa18.11■□□□□ 0.49
LSM1-204ENST00000522515 LMBR1Q8WVP7 490 aa18.11■□□□□ 0.49
LSM1-204ENST00000522515 ZBTB10Q96DT7 871 aa18.11■□□□□ 0.49
LSM1-204ENST00000522515 PAGE5Q96GU1 130 aa18.11■□□□□ 0.49
LSM1-204ENST00000522515 TIGD1Q96MW7 591 aa18.11■□□□□ 0.49
LSM1-204ENST00000522515 RUSC1Q9BVN2 902 aa18.11■□□□□ 0.49
LSM1-204ENST00000522515 SENP6Q9GZR1 1112 aaPredicted RBP18.11■□□□□ 0.49
LSM1-204ENST00000522515 BMP2KQ9NSY1 1161 aaPredicted RBP18.11■□□□□ 0.49
LSM1-204ENST00000522515 USO1O60763 962 aaKnown RBP18.1■□□□□ 0.49
LSM1-204ENST00000522515 COL6A1P12109 1028 aa18.1■□□□□ 0.49
LSM1-204ENST00000522515 CAPN2P17655 700 aa18.1■□□□□ 0.49
LSM1-204ENST00000522515 CYP11B2P19099 503 aa18.1■□□□□ 0.49
LSM1-204ENST00000522515 EN2P19622 333 aaPredicted RBP18.1■□□□□ 0.49
LSM1-204ENST00000522515 HOXC8P31273 242 aa18.1■□□□□ 0.49
LSM1-204ENST00000522515 ARSHQ5FYA8 562 aa18.1■□□□□ 0.49
LSM1-204ENST00000522515 NFRKBQ6P4R8 1299 aa18.1■□□□□ 0.49
LSM1-204ENST00000522515 C1orf186Q6ZWK4 172 aa18.1■□□□□ 0.49
LSM1-204ENST00000522515 GPBP1Q86WP2 473 aa18.1■□□□□ 0.49
LSM1-204ENST00000522515 ABHD8Q96I13 439 aa18.1■□□□□ 0.49
LSM1-204ENST00000522515 PAWRQ96IZ0 340 aaKnown RBP18.1■□□□□ 0.49
LSM1-204ENST00000522515 TNMDQ9H2S6 317 aa18.1■□□□□ 0.49
LSM1-204ENST00000522515 DHX33Q9H6R0 707 aaKnown RBP18.1■□□□□ 0.49
LSM1-204ENST00000522515 MAGEF1Q9HAY2 307 aa18.1■□□□□ 0.49
LSM1-204ENST00000522515 GTF2IRD1Q9UHL9 959 aa18.1■□□□□ 0.49
LSM1-204ENST00000522515 A0A0U1RQG5 324 aaPredicted RBP18.09■□□□□ 0.49
LSM1-204ENST00000522515 C17orf102A2RUQ5 167 aa18.09■□□□□ 0.49
LSM1-204ENST00000522515 MYMKA6NI61 221 aa18.09■□□□□ 0.49
LSM1-204ENST00000522515 RRN3P2A6NIE6 340 aa18.09■□□□□ 0.49
LSM1-204ENST00000522515 MAFO75444 373 aaPredicted RBP18.09■□□□□ 0.49
LSM1-204ENST00000522515 C22orf31O95567 290 aa18.09■□□□□ 0.49
LSM1-204ENST00000522515 KLRC1P26715 233 aa18.09■□□□□ 0.49
LSM1-204ENST00000522515 CASP1P29466 404 aa18.09■□□□□ 0.49
LSM1-204ENST00000522515 POLGP54098 1239 aaPredicted RBP18.09■□□□□ 0.49
LSM1-204ENST00000522515 ADAM17P78536 824 aa18.09■□□□□ 0.49
LSM1-204ENST00000522515 ZNF200P98182 395 aaPredicted RBP18.09■□□□□ 0.49
LSM1-204ENST00000522515 RAD51AP2Q09MP3 1159 aa18.09■□□□□ 0.49
LSM1-204ENST00000522515 TBC1D8BQ0IIM8 1120 aa18.09■□□□□ 0.49
LSM1-204ENST00000522515 SH3RF1Q7Z6J0 888 aa18.09■□□□□ 0.49
LSM1-204ENST00000522515 SESTD1Q86VW0 696 aa18.09■□□□□ 0.49
LSM1-204ENST00000522515 SLC43A3Q8NBI5 491 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms