RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 MMTAG2Q9BU76 263 aaKnown RBP10.49□□□□□ -0.73
VCAN-210ENST00000513960 NSRP1Q9H0G5 558 aaKnown RBP10.49□□□□□ -0.73
VCAN-210ENST00000513960 GDF3Q9NR23 364 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 SPATA31A6Q5VVP1 1343 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 POTEMA6NI47 508 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 RASSF10A6NK89 507 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 SPDYE3A6NKU9 549 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 PPP1R12AO14974 1030 aaPredicted RBP10.49□□□□□ -0.73
VCAN-210ENST00000513960 ATP6V1G2O95670 118 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 FXR2P51116 673 aaKnown RBP eCLIP10.49□□□□□ -0.734e-8■■■■■ 35.7
VCAN-210ENST00000513960 SCNN1DP51172 638 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 MKRN4PQ13434 485 aaPredicted RBP10.49□□□□□ -0.73
VCAN-210ENST00000513960 FAM83BQ5T0W9 1011 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 CNOT8Q9UFF9 292 aaKnown RBP10.49□□□□□ -0.73
VCAN-210ENST00000513960 SUGT1Q9Y2Z0 365 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 PVALEFA0A1B0GWK0 134 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 SLC37A4O43826 429 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 CHN1P15882 459 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 FLT3P36888 993 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 GRB10Q13322 594 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 DRP2Q13474 957 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 GPATCH4Q5T3I0 446 aaKnown RBP10.49□□□□□ -0.73
VCAN-210ENST00000513960 ADGRF4Q8IZF3 695 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 KLHL29Q96CT2 875 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 MTMR9Q96QG7 549 aa10.49□□□□□ -0.73
VCAN-210ENST00000513960 NHSQ6T4R5 1651 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 MYMKA6NI61 221 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 PGRMC1O00264 195 aaKnown RBP10.48□□□□□ -0.73
VCAN-210ENST00000513960 ANP32DO95626 131 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 PCK1P35558 622 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 CCNHP51946 323 aaPredicted RBP10.48□□□□□ -0.73
VCAN-210ENST00000513960 ZNF543Q08ER8 600 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 PDIA5Q14554 519 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 PLCB4Q15147 1175 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 UBE2SQ16763 222 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 DOK7Q18PE1 504 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 MIIPQ5JXC2 388 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 DENND2CQ68D51 928 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 USP38Q8NB14 1042 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 PRCCQ92733 491 aaPredicted RBP10.48□□□□□ -0.73
VCAN-210ENST00000513960 ERGIC2Q96RQ1 377 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 SEMA6BQ9H3T3 888 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 AZI2Q9H6S1 392 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 CPSF2Q9P2I0 782 aaKnown RBP10.48□□□□□ -0.73
VCAN-210ENST00000513960 NOC2LQ9Y3T9 749 aaKnown RBP10.48□□□□□ -0.73
VCAN-210ENST00000513960 A0A087X0T9 212 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 FAM228BP0C875 321 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 SLC16A2P36021 539 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 NBPF9Q3BBW0 867 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 CAPRIN2Q6IMN6 1127 aaKnown RBP10.48□□□□□ -0.73
VCAN-210ENST00000513960 YTHDF3Q7Z739 585 aaKnown RBP10.48□□□□□ -0.73
VCAN-210ENST00000513960 HOOK3Q86VS8 718 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 KIAA0895Q8NCT3 520 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 U2AF1L4Q8WU68 220 aaKnown RBP10.48□□□□□ -0.73
VCAN-210ENST00000513960 IQCDQ96DY2 449 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 LBHD1Q9BQE6 289 aaPredicted RBP10.48□□□□□ -0.73
VCAN-210ENST00000513960 JMJD4Q9H9V9 463 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 RIC8AQ9NPQ8 531 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 RNF14Q9UBS8 474 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 DDX25Q9UHL0 483 aaKnown RBP10.48□□□□□ -0.73
VCAN-210ENST00000513960 TRAPPC3O43617 180 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 ITGA4P13612 1032 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 NOVP48745 357 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 LACTBP83111 547 aaPredicted RBP10.48□□□□□ -0.73
VCAN-210ENST00000513960 GABPAQ06546 454 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 SLC27A3Q5K4L6 730 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 PPP1R18Q6NYC8 613 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 ARMC2Q8NEN0 867 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 TEKT1Q969V4 418 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 PURBQ96QR8 312 aaKnown RBP10.48□□□□□ -0.73
VCAN-210ENST00000513960 XPO6Q96QU8 1125 aaKnown RBP10.48□□□□□ -0.73
VCAN-210ENST00000513960 PRMT1Q99873 361 aaKnown RBP10.48□□□□□ -0.73
VCAN-210ENST00000513960 TTYH3Q9C0H2 523 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 PSTPIP2Q9H939 334 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 BLOC1S4Q9NUP1 217 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 SNX24Q9Y343 169 aa10.48□□□□□ -0.73
VCAN-210ENST00000513960 GOLGA6L10A0A0M3HER8 536 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 CCT8L1PA6NM43 557 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 PRLRP16471 622 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 ELF3P78545 371 aaPredicted RBP10.47□□□□□ -0.73
VCAN-210ENST00000513960 BIRC3Q13489 604 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 CENPPQ6IPU0 288 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 TTBK2Q6IQ55 1244 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 KCTD1Q719H9 257 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 PIK3R5Q8WYR1 880 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 RAD54LQ92698 747 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 FMO2Q99518 471 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 A1CFQ9NQ94 594 aaKnown RBP10.47□□□□□ -0.73
VCAN-210ENST00000513960 DDX4Q9NQI0 724 aaKnown RBP10.47□□□□□ -0.73
VCAN-210ENST00000513960 PCDHA12Q9UN75 941 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 ATP6V0A2Q9Y487 856 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 MYH10P35580 1976 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 SERPING1P05155 500 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 ZNF211Q13398 564 aaPredicted RBP10.47□□□□□ -0.73
VCAN-210ENST00000513960 IFI16Q16666 785 aaKnown RBP10.47□□□□□ -0.73
VCAN-210ENST00000513960 GNPTABQ3T906 1256 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 VPS36Q86VN1 386 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 LRRC34Q8IZ02 419 aa10.47□□□□□ -0.73
VCAN-210ENST00000513960 GUF1Q8N442 669 aaKnown RBP10.47□□□□□ -0.73
VCAN-210ENST00000513960 RUBCNQ92622 972 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms