RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 CEP131Q9UPN4 1083 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 UNC80Q8N2C7 3258 aa10.94□□□□□ -0.66
RNF4-221ENST00000513643 SPTBN5Q9NRC6 3674 aaKnown RBP10.94□□□□□ -0.66
RNF4-221ENST00000513643 MAGEB2O15479 319 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 GPR32O75388 356 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 LYPLA2O95372 231 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 GJB5O95377 273 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 CTSHP09668 335 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 TOB1P50616 345 aaPredicted RBP10.93□□□□□ -0.66
RNF4-221ENST00000513643 PSMC5P62195 406 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 DEFB103AP81534 67 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 HTRA4P83105 476 aaPredicted RBP10.93□□□□□ -0.66
RNF4-221ENST00000513643 PRKCEQ02156 737 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 SAFBQ15424 915 aaKnown RBP eCLIP10.93□□□□□ -0.66
RNF4-221ENST00000513643 RAB30Q15771 203 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 ZNF697Q5TEC3 545 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 IER5Q5VY09 327 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.93□□□□□ -0.66
RNF4-221ENST00000513643 ANO5Q75V66 913 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 RTN4RL1Q86UN2 441 aaPredicted RBP10.93□□□□□ -0.66
RNF4-221ENST00000513643 NOSTRINQ8IVI9 506 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 USP38Q8NB14 1042 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 SEPT8Q92599 483 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 APBB2Q92870 758 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 CELF4Q9BZC1 486 aaKnown RBP10.93□□□□□ -0.66
RNF4-221ENST00000513643 ZNF576Q9H609 170 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 CDHR5Q9HBB8 845 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 STXBP5LQ9Y2K9 1186 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 SAMM50Q9Y512 469 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 CDY2AQ9Y6F7 541 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 MYO9BQ13459 2157 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 REV3LO60673 3130 aa10.93□□□□□ -0.66
RNF4-221ENST00000513643 WDR81Q562E7 1941 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 ZBBXA8MT70 800 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 ENPP3O14638 875 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 CHMP2AO43633 222 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 SLITRK3O94933 977 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 ARHGEF15O94989 841 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 P4HBP07237 508 aaKnown RBP10.92□□□□□ -0.66
RNF4-221ENST00000513643 MYOGP15173 224 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 QARSP47897 775 aaKnown RBP10.92□□□□□ -0.66
RNF4-221ENST00000513643 RABGGTBP53611 331 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 GRIN2CQ14957 1233 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 TSHZ1Q6ZSZ6 1077 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 C4orf19Q8IY42 314 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 ZNF710Q8N1W2 664 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 FAM184AQ8NB25 1140 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 SP7Q8TDD2 431 aaPredicted RBP10.92□□□□□ -0.66
RNF4-221ENST00000513643 TOP1MTQ969P6 601 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 CDX2Q99626 313 aaPredicted RBP10.92□□□□□ -0.66
RNF4-221ENST00000513643 IFIH1Q9BYX4 1025 aaKnown RBP10.92□□□□□ -0.66
RNF4-221ENST00000513643 ADAMTS10Q9H324 1103 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 TCEAL9Q9UHQ7 104 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 PCDHA12Q9UN75 941 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 TRPV2Q9Y5S1 764 aa10.92□□□□□ -0.66
RNF4-221ENST00000513643 MYH9P35579 1960 aaKnown RBP10.91□□□□□ -0.66
RNF4-221ENST00000513643 NEMFO60524 1076 aa10.91□□□□□ -0.66
RNF4-221ENST00000513643 MAFO75444 373 aaPredicted RBP10.91□□□□□ -0.66
RNF4-221ENST00000513643 GHRP10912 638 aa10.91□□□□□ -0.66
RNF4-221ENST00000513643 FOSBP53539 338 aa10.91□□□□□ -0.66
RNF4-221ENST00000513643 CALCRLQ16602 461 aa10.91□□□□□ -0.66
RNF4-221ENST00000513643 CKAP2LQ8IYA6 745 aa10.91□□□□□ -0.66
RNF4-221ENST00000513643 TMEM40Q8WWA1 233 aa10.91□□□□□ -0.66
RNF4-221ENST00000513643 LINC01599Q8WXQ3 324 aa10.91□□□□□ -0.66
RNF4-221ENST00000513643 RAD9AQ99638 391 aa10.91□□□□□ -0.66
RNF4-221ENST00000513643 FAM49AQ9H0Q0 323 aaPredicted RBP10.91□□□□□ -0.66
RNF4-221ENST00000513643 NKX2-4Q9H2Z4 354 aa10.91□□□□□ -0.66
RNF4-221ENST00000513643 TMX1Q9H3N1 280 aa10.91□□□□□ -0.66
RNF4-221ENST00000513643 TTC12Q9H892 705 aaPredicted RBP10.91□□□□□ -0.66
RNF4-221ENST00000513643 RGL1Q9NZL6 768 aa10.91□□□□□ -0.66
RNF4-221ENST00000513643 MSRAQ9UJ68 235 aa10.91□□□□□ -0.66
RNF4-221ENST00000513643 PPME1Q9Y570 386 aa10.91□□□□□ -0.66
RNF4-221ENST00000513643 VCANP13611 3396 aa10.91□□□□□ -0.66
RNF4-221ENST00000513643 TMEM150BA6NC51 233 aa10.9□□□□□ -0.66
RNF4-221ENST00000513643 BAG4O95429 457 aaKnown RBP10.9□□□□□ -0.66
RNF4-221ENST00000513643 SPATA31C1P0DKV0 1188 aa10.9□□□□□ -0.66
RNF4-221ENST00000513643 XRCC6P12956 609 aaKnown RBP eCLIP10.9□□□□□ -0.66
RNF4-221ENST00000513643 POU3F3P20264 500 aaPredicted RBP10.9□□□□□ -0.66
RNF4-221ENST00000513643 GJB2P29033 226 aa10.9□□□□□ -0.66
RNF4-221ENST00000513643 CD52P31358 61 aa10.9□□□□□ -0.66
RNF4-221ENST00000513643 KCNJ6P48051 423 aa10.9□□□□□ -0.66
RNF4-221ENST00000513643 CRYBB1P53674 252 aaPredicted RBP10.9□□□□□ -0.66
RNF4-221ENST00000513643 TAP1Q03518 808 aa10.9□□□□□ -0.66
RNF4-221ENST00000513643 DRP2Q13474 957 aa10.9□□□□□ -0.66
RNF4-221ENST00000513643 EFCAB12Q6NXP0 572 aa10.9□□□□□ -0.66
RNF4-221ENST00000513643 TMCO2Q7Z6W1 182 aaPredicted RBP10.9□□□□□ -0.66
RNF4-221ENST00000513643 ZNF579Q8NAF0 562 aaKnown RBP10.9□□□□□ -0.66
RNF4-221ENST00000513643 BANK1Q8NDB2 785 aa10.9□□□□□ -0.66
RNF4-221ENST00000513643 EIF2AK1Q9BQI3 630 aaKnown RBP10.9□□□□□ -0.66
RNF4-221ENST00000513643 TSPYL2Q9H2G4 693 aaPredicted RBP10.9□□□□□ -0.66
RNF4-221ENST00000513643 DHX33Q9H6R0 707 aaKnown RBP10.9□□□□□ -0.66
RNF4-221ENST00000513643 ZSWIM4Q9H7M6 989 aa10.9□□□□□ -0.66
RNF4-221ENST00000513643 RC3H2Q9HBD1 1191 aaKnown RBP10.9□□□□□ -0.66
RNF4-221ENST00000513643 ERVK-5Q9HDB9 667 aa10.9□□□□□ -0.66
RNF4-221ENST00000513643 PADI3Q9ULW8 664 aa10.9□□□□□ -0.66
RNF4-221ENST00000513643 TTC3P53804 2025 aa10.9□□□□□ -0.66
RNF4-221ENST00000513643 SIP14410 1827 aa10.9□□□□□ -0.66
RNF4-221ENST00000513643 PTPRSQ13332 1948 aa10.9□□□□□ -0.67
RNF4-221ENST00000513643 XIRP2A4UGR9 3374 aa10.89□□□□□ -0.67
RNF4-221ENST00000513643 LCHNA4D1U4 455 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms