RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 FOXB1Q99853 325 aa5.45□□□□□ -1.54
HMGB1P28-201ENST00000507778 ANO3Q9BYT9 981 aa5.45□□□□□ -1.54
HMGB1P28-201ENST00000507778 KCNK12Q9HB15 430 aa5.45□□□□□ -1.54
HMGB1P28-201ENST00000507778 INCENPQ9NQS7 918 aa5.45□□□□□ -1.54
HMGB1P28-201ENST00000507778 AASDHPPTQ9NRN7 309 aa5.45□□□□□ -1.54
HMGB1P28-201ENST00000507778 GALNT8Q9NY28 637 aa5.45□□□□□ -1.54
HMGB1P28-201ENST00000507778 FAN1Q9Y2M0 1017 aa5.45□□□□□ -1.54
HMGB1P28-201ENST00000507778 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.45□□□□□ -1.54
HMGB1P28-201ENST00000507778 PRPF6O94906 941 aaKnown RBP5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 PARNO95453 639 aaKnown RBP5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 MPIG6BO95866 241 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 MT-CO1P00395 513 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 PRLP01236 227 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 GPR3P46089 330 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 SKIDA1Q1XH10 827 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 PRAMEF9Q5VWM5 478 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 SLFN12LQ6IEE8 588 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 CXorf67Q86X51 503 aaPredicted RBP5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 AMOTL1Q8IY63 956 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 RAVER1Q8IY67 606 aaKnown RBP5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 DTX3Q8N9I9 347 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 FBXO15Q8NCQ5 510 aaPredicted RBP5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 C1orf162Q8NEQ5 155 aaPredicted RBP5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 WDR48Q8TAF3 677 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 FAXDC2Q96IV6 333 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 MYL10Q9BUA6 226 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 SGPP1Q9BX95 441 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 AMNQ9BXJ7 453 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 SLC13A1Q9BZW2 595 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 SEMA4AQ9H3S1 761 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 POFUT1Q9H488 388 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 DLL4Q9NR61 685 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 MKS1Q9NXB0 559 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 WASF3Q9UPY6 502 aa5.44□□□□□ -1.54
HMGB1P28-201ENST00000507778 E2F8A0AVK6 867 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 TRIM75PA6NK02 468 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 ELL2O00472 640 aaPredicted RBP5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 N4BP3O15049 544 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 RBP3P10745 1247 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 ENPP1P22413 925 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 ECE1P42892 770 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 RAB27AP51159 221 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 MANFP55145 182 aaKnown RBP5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 FOXO4P98177 505 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 ADCY2Q08462 1091 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 MOGSQ13724 837 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 FSCN1Q16658 493 aaKnown RBP5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 KIAA1841Q6NSI8 718 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 TTLL7Q6ZT98 887 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 FMNL3Q8IVF7 1028 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 IGDCC3Q8IVU1 814 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 TGFBRAP1Q8WUH2 860 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 KCNN1Q92952 543 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 FERMT2Q96AC1 680 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 HOOK2Q96ED9 719 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 SYT3Q9BQG1 590 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 WNT8AQ9H1J5 351 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 CHPF2Q9P2E5 772 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 ARHGAP20Q9P2F6 1191 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 MRFAP1Q9Y605 127 aa5.43□□□□□ -1.54
HMGB1P28-201ENST00000507778 ST20-MTHFSA0A0A6YYL1 179 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 PRSS38A1L453 326 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 MAFGO15525 162 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 AKAP10O43572 662 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 H2AFYO75367 372 aaKnown RBP5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 SNUPNO95149 360 aaKnown RBP5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 CLEC2LP0C7M8 214 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 IGFBP6P24592 240 aaPredicted RBP5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 THBS2P35442 1172 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 GLRBP48167 497 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 RGS3P49796 1198 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 EPHB3P54753 998 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 ITGA1P56199 1179 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 MYBPC3Q14896 1274 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 PPP2R5AQ15172 486 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 PCBP2Q15366 365 aaKnown RBP eCLIP5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 CLUL1Q15846 466 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 NFE2Q16621 373 aaPredicted RBP5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 UGT8Q16880 541 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 CT83Q5H943 113 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 LRSAM1Q6UWE0 723 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 DPP8Q6V1X1 898 aaPredicted RBP5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 KANSL1Q7Z3B3 1105 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 STK32CQ86UX6 486 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 PNMA8AQ86V59 439 aaPredicted RBP5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 TTLL6Q8N841 843 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 RPGRQ92834 1020 aaKnown RBP5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 EAF2Q96CJ1 260 aaPredicted RBP5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 CLIC6Q96NY7 704 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 ORAI2Q96SN7 254 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 GORASP1Q9BQQ3 440 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 BTBD2Q9BX70 525 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 GCM1Q9NP62 436 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 PPP2R3BQ9Y5P8 575 aa5.42□□□□□ -1.54
HMGB1P28-201ENST00000507778 FZD9O00144 591 aa5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 PAX4O43316 350 aa5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 IL18BPO95998 194 aa5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 APEX1P27695 318 aaKnown RBP5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 BCAR1P56945 870 aa5.41□□□□□ -1.54
HMGB1P28-201ENST00000507778 DLG4P78352 724 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms