RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	CDY2A	Q9Y6F7	541 aa		11.02	□□□□□ -0.65
CALD1-223	ENST00000496024	COL1A2	P08123	1366 aa		11.02	□□□□□ -0.65
CALD1-223	ENST00000496024		A0A087WWV3	80 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	SMIM35	A0A1B0GVV1	85 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	SOX1	O00570	391 aa	Predicted RBP	11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	STX6	O43752	255 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	DKC1	O60832	514 aa	Known RBP eCLIP	11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	SLITRK3	O94933	977 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	STBD1	O95210	358 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	C22orf31	O95567	290 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	CHRNA1	P02708	482 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	ACTN1	P12814	892 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	NPEPPS	P55786	919 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	MRPS6	P82932	125 aa	Known RBP	11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	TBC1D8B	Q0IIM8	1120 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	EFCAB12	Q6NXP0	572 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	FAM173B	Q6P4H8	233 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	BRAP	Q7Z569	592 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	LRRC71	Q8N4P6	559 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	C4orf32	Q8N8J7	132 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	LRCH3	Q96II8	777 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	ZSWIM4	Q9H7M6	989 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	CXXC1	Q9P0U4	656 aa	Predicted RBP	11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	CEP131	Q9UPN4	1083 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	MTMR6	Q9Y217	621 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	MYO9B	Q13459	2157 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	LAMA3	Q16787	3333 aa		11.01	□□□□□ -0.65
CALD1-223	ENST00000496024	GRXCR1	A8MXD5	290 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024		M0QZ92	97 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	ZBTB39	O15060	712 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	MAGEB2	O15479	319 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	CAND2	O75155	1236 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	PARN	O95453	639 aa	Known RBP	11	□□□□□ -0.65
CALD1-223	ENST00000496024	VTN	P04004	478 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	PFKM	P08237	780 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	GHR	P10912	638 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	REST	Q13127	1097 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	TCTN1	Q2MV58	587 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	XKR9	Q5GH70	373 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	IER5	Q5VY09	327 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	FAM109B	Q6ICB4	259 aa	Predicted RBP	11	□□□□□ -0.65
CALD1-223	ENST00000496024	ANO5	Q75V66	913 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	KIAA0319L	Q8IZA0	1049 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	ZNF579	Q8NAF0	562 aa	Known RBP	11	□□□□□ -0.65
CALD1-223	ENST00000496024	HERVK_113	Q902F9	699 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	ZNF668	Q96K58	619 aa	Predicted RBP	11	□□□□□ -0.65
CALD1-223	ENST00000496024	CEP170P1	Q96L14	293 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	NIFK	Q9BYG3	293 aa	Known RBP	11	□□□□□ -0.65
CALD1-223	ENST00000496024	MTIF3	Q9H2K0	278 aa	Known RBP	11	□□□□□ -0.65
CALD1-223	ENST00000496024	LRWD1	Q9UFC0	647 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	AKT3	Q9Y243	479 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	TRPV2	Q9Y5S1	764 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	SI	P14410	1827 aa		11	□□□□□ -0.65
CALD1-223	ENST00000496024	MED24	O75448	989 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	CXCL10	P02778	98 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	TMOD1	P28289	359 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	YWHAB	P31946	246 aa	Known RBP	10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	FXR1	P51114	621 aa	Known RBP eCLIP	10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	FXR2	P51116	673 aa	Known RBP eCLIP	10.99	□□□□□ -0.65	7e-11	■■■□□ 18.5
CALD1-223	ENST00000496024	CEBPZ	Q03701	1054 aa	Known RBP	10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	MGAT3	Q09327	533 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	LPIN1	Q14693	890 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	TARBP2	Q15633	366 aa	Known RBP	10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	IL17A	Q16552	155 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	KIZ	Q2M2Z5	673 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	LRIT3	Q3SXY7	679 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	FAM26D	Q5JW98	314 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	CNKSR3	Q6P9H4	555 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	POTEG	Q6S5H5	508 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	DTHD1	Q6ZMT9	781 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	PPP4R3CP	Q6ZMV5	832 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	RPAIN	Q86UA6	219 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	C4orf19	Q8IY42	314 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	DBF4B	Q8NFT6	615 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	ERMN	Q8TAM6	284 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	NEK9	Q8TD19	979 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	PIGO	Q8TEQ8	1089 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	SEPT8	Q92599	483 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	CCDC43	Q96MW1	224 aa	Known RBP	10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	MAP7D2	Q96T17	732 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	HSD17B14	Q9BPX1	270 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	CELF4	Q9BZC1	486 aa	Known RBP	10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	CDHR5	Q9HBB8	845 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	CYP26B1	Q9NR63	512 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	SLC4A7	Q9Y6M7	1214 aa		10.99	□□□□□ -0.65
CALD1-223	ENST00000496024	VWA3A	A6NCI4	1184 aa		10.98	□□□□□ -0.65
CALD1-223	ENST00000496024	PP2D1	A8MPX8	630 aa		10.98	□□□□□ -0.65
CALD1-223	ENST00000496024	LAD1	O00515	517 aa		10.98	□□□□□ -0.65
CALD1-223	ENST00000496024	RPLP2	P05387	115 aa	Known RBP	10.98	□□□□□ -0.65
CALD1-223	ENST00000496024	SPATA31C1	P0DKV0	1188 aa		10.98	□□□□□ -0.65
CALD1-223	ENST00000496024	CDC25A	P30304	524 aa		10.98	□□□□□ -0.65
CALD1-223	ENST00000496024	CD52	P31358	61 aa		10.98	□□□□□ -0.65
CALD1-223	ENST00000496024	CCT6A	P40227	531 aa	Known RBP	10.98	□□□□□ -0.65
CALD1-223	ENST00000496024	KCNJ6	P48051	423 aa		10.98	□□□□□ -0.65
CALD1-223	ENST00000496024	POLG	P54098	1239 aa	Predicted RBP	10.98	□□□□□ -0.65
CALD1-223	ENST00000496024	NLRP11	P59045	1033 aa	Known RBP	10.98	□□□□□ -0.65
CALD1-223	ENST00000496024	ATP2C1	P98194	919 aa	Predicted RBP	10.98	□□□□□ -0.65
CALD1-223	ENST00000496024	DRP2	Q13474	957 aa		10.98	□□□□□ -0.65
CALD1-223	ENST00000496024	IKBKE	Q14164	716 aa		10.98	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 20 ms