RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	ANKS1A	Q92625	1134 aa		5.27	□□□□□ -1.57
VPS52-222	ENST00000495981	CEP89	Q96ST8	783 aa		5.27	□□□□□ -1.57
VPS52-222	ENST00000495981	HAUS7	Q99871	368 aa		5.27	□□□□□ -1.57
VPS52-222	ENST00000495981	AARSD1	Q9BTE6	412 aa	Known RBP	5.27	□□□□□ -1.57
VPS52-222	ENST00000495981	MRPL4	Q9BYD3	311 aa	Known RBP	5.27	□□□□□ -1.57
VPS52-222	ENST00000495981	TMEM39B	Q9GZU3	492 aa		5.27	□□□□□ -1.57
VPS52-222	ENST00000495981	TRIM39	Q9HCM9	518 aa		5.27	□□□□□ -1.57
VPS52-222	ENST00000495981	JAG2	Q9Y219	1238 aa		5.27	□□□□□ -1.57
VPS52-222	ENST00000495981	FOCAD	Q5VW36	1801 aa		5.27	□□□□□ -1.57
VPS52-222	ENST00000495981	DCHS1	Q96JQ0	3298 aa		5.27	□□□□□ -1.57
VPS52-222	ENST00000495981	UTY	O14607	1347 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	CDK5RAP2	Q96SN8	1893 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	DNAJC25-GNG10	A0A024R161	153 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	TRAV20	A0A0B4J274	112 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	ANKRD18B	A2A2Z9	1011 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	ANKRD34B	A5PLL1	514 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	ALG1L2	C9J202	215 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	GRM8	O00222	908 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	DDX3Y	O15523	660 aa	Known RBP	5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	TPD52L2	O43399	206 aa	Known RBP	5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	VAMP4	O75379	141 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	FGFR1	P11362	822 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	CETP	P11597	493 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	EPHB4	P54760	987 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	ERVK-24	P63145	666 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	MCL1	Q07820	350 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	SETDB1	Q15047	1291 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	LRRC41	Q15345	812 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	NKG7	Q16617	165 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	RABL6	Q3YEC7	729 aa	Predicted RBP	5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	TRIM61	Q5EBN2	209 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	C8orf86	Q6ZUL3	223 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	ZNF804A	Q7Z570	1209 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	SCUBE1	Q8IWY4	988 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	MRPL41	Q8IXM3	137 aa	Known RBP	5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	ANKRD44	Q8N8A2	993 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	FAM13C	Q8NE31	585 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	ATXN2L	Q8WWM7	1075 aa	Known RBP	5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	DDX1	Q92499	740 aa	Known RBP	5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	TMEM87B	Q96K49	555 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	MPHOSPH8	Q99549	860 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	C1QTNF1	Q9BXJ1	281 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	ASPSCR1	Q9BZE9	553 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	JPH1	Q9HDC5	661 aa	Predicted RBP	5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	INTS7	Q9NVH2	962 aa	Known RBP	5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	KCNK4	Q9NYG8	393 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	MCM8	Q9UJA3	840 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	OGDHL	Q9ULD0	1010 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	PPP1R9A	Q9ULJ8	1098 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	SPTBN4	Q9H254	2564 aa		5.26	□□□□□ -1.57
VPS52-222	ENST00000495981	KIF16B	Q96L93	1317 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	FRMPD3	Q5JV73	1810 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	PTPRZ1	P23471	2315 aa	Predicted RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	CACNA1B	Q00975	2339 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	SHOX	O15266	292 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	TMPRSS2	O15393	492 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	TSPAN6	O43657	245 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	TP53	P04637	393 aa	Predicted RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	PABPC1	P11940	636 aa	Known RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	ITGB8	P26012	769 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	KCNJ4	P48050	445 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	ARL4D	P49703	201 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	NLRP12	P59046	1061 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	ETF1	P62495	437 aa	Known RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	TFF2	Q03403	129 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	EXOSC9	Q06265	439 aa	Known RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	IFIT5	Q13325	482 aa	Known RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	SNAPC2	Q13487	334 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	COL9A3	Q14050	684 aa	Predicted RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	HSP90AA2P	Q14568	343 aa	Predicted RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	SEPT7	Q16181	437 aa	Known RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	BBS9	Q3SYG4	887 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	MFSD14B	Q5SR56	506 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	LMBR1L	Q6UX01	489 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	FOXD4L3	Q6VB84	417 aa	Predicted RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	C1orf229	Q6ZS94	237 aa	Predicted RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	ANKRD23	Q86SG2	305 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	GPR161	Q8N6U8	529 aa	Known RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	TDRD7	Q8NHU6	1098 aa	Known RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	SLC7A14	Q8TBB6	771 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	PMM1	Q92871	262 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	SUCLG2	Q96I99	432 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	MRGPRX3	Q96LB0	322 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	P2RX7	Q99572	595 aa	Known RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	CDC6	Q99741	560 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	DPH2	Q9BQC3	489 aa	Predicted RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	TDRD3	Q9H7E2	651 aa	Known RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	ZCCHC17	Q9NP64	241 aa	Known RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	MAGEC2	Q9UBF1	373 aa	Predicted RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	ZNF70	Q9UC06	446 aa	Predicted RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	GDF2	Q9UK05	429 aa	Predicted RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	GJD2	Q9UKL4	321 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	PLXNB2	O15031	1838 aa		5.25	□□□□□ -1.57
VPS52-222	ENST00000495981	MYO15A	Q9UKN7	3530 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	PKD1L2	Q7Z442	2459 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	TCP10L2	B9ZVM9	353 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	AGRP	O00253	132 aa		5.24	□□□□□ -1.57
VPS52-222	ENST00000495981	FANCG	O15287	622 aa		5.24	□□□□□ -1.57

Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms