RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 TLL1O43897 1013 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 INSRRP14616 1297 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 STAT5BP51692 787 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 SCRN1Q12765 414 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 ADGRE1Q14246 886 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 PLCB4Q15147 1175 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 CCDC85BQ15834 202 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-214ENST00000493608 PRR16Q569H4 304 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 MARCH8Q5T0T0 291 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 NIPA1Q7RTP0 329 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 TRMT1LQ7Z2T5 733 aaKnown RBP12.11□□□□□ -0.47
COL6A3-214ENST00000493608 TEX2Q8IWB9 1127 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 CCDC148Q8NFR7 591 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 BICD2Q8TD16 824 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 DNAJB3Q8WWF6 145 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 ZNF577Q9BSK1 485 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 FAM49AQ9H0Q0 323 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-214ENST00000493608 SLKQ9H2G2 1235 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-214ENST00000493608 TPCN1Q9ULQ1 816 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 EMSYQ7Z589 1322 aa12.11□□□□□ -0.47
COL6A3-214ENST00000493608 SIP14410 1827 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 ABHD14A-ACY1A0A1B0GW23 586 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 BACH1O14867 736 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 RNF40O75150 1001 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 ATG7O95352 703 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 DEXIO95424 95 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 CHRNA1P02708 482 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 AK2P54819 239 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 PLEKHG4Q58EX7 1191 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 SWSAP1Q6NVH7 229 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 CPLX2Q6PUV4 134 aaKnown RBP12.1□□□□□ -0.47
COL6A3-214ENST00000493608 ABHD15Q6UXT9 468 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 USP38Q8NB14 1042 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 GJA10Q969M2 543 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 SH3GLB2Q9NR46 395 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 TUBE1Q9UJT0 475 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 KCNJ14Q9UNX9 436 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 PRUNE2Q8WUY3 3088 aa12.1□□□□□ -0.47
COL6A3-214ENST00000493608 EPOPA6NHQ4 379 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 RRN3P2A6NIE6 340 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 UPP2O95045 317 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 GHRP10912 638 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 TAP1Q03518 808 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 TMEM62Q0P6H9 643 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 MCTP2Q6DN12 878 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 PLPPR4Q7Z2D5 763 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 CCDC60Q8IWA6 550 aaPredicted RBP12.09□□□□□ -0.47
COL6A3-214ENST00000493608 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.09□□□□□ -0.47
COL6A3-214ENST00000493608 MYOCDQ8IZQ8 938 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 BLIDQ8IZY5 108 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 NECAB1Q8N987 351 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 TBCKQ8TEA7 893 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 ARNTL2Q8WYA1 636 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 IL21Q9HBE4 155 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 PRDM6Q9NQX0 595 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 GJB4Q9NTQ9 266 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 CHD7Q9P2D1 2997 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 PCDHA4Q9UN74 947 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 A0A0C4DFX4 3053 aa12.09□□□□□ -0.47
COL6A3-214ENST00000493608 PRRC2BQ5JSZ5 2229 aaKnown RBP12.09□□□□□ -0.47
COL6A3-214ENST00000493608 UNC80Q8N2C7 3258 aa12.08□□□□□ -0.47
COL6A3-214ENST00000493608 IGKV6D-21A0A0A0MT36 114 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 MBLAC1A4D2B0 266 aaPredicted RBP12.08□□□□□ -0.48
COL6A3-214ENST00000493608 DLL1O00548 723 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 PFKFB2O60825 505 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 CAND2O75155 1236 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 GJB5O95377 273 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 LARGE1O95461 756 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 CTDNEP1O95476 244 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 ATP4AP20648 1035 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 CIITAP33076 1130 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 ANAPC15P60006 121 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 NPY5RQ15761 445 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 FAM26DQ5JW98 314 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 KRT40Q6A162 431 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 TAF2Q6P1X5 1199 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 PDXDC2PQ6P474 469 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 RSPH3Q86UC2 560 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 CKAP2LQ8IYA6 745 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 MICALL1Q8N3F8 863 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 SEPT8Q92599 483 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 LENG9Q96B70 501 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 ZNF302Q9NR11 478 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 TBC1D22BQ9NU19 505 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 CDY2AQ9Y6F7 541 aa12.08□□□□□ -0.48
COL6A3-214ENST00000493608 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.07□□□□□ -0.48
COL6A3-214ENST00000493608 M0R2N6 131 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 MSH4O15457 936 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 EFCAB14O75071 495 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 TDP2O95551 362 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 AMHP03971 560 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 KLRC1P26715 233 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 USP11P51784 963 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 NEK4P51957 841 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 SETQ01105 290 aaPredicted RBP12.07□□□□□ -0.48
COL6A3-214ENST00000493608 MGAT3Q09327 533 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 LPIN1Q14693 890 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 ME3Q16798 604 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 FAM160B1Q5W0V3 765 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 MIS18BP1Q6P0N0 1132 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms