RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 PAK2Q13177 524 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 MTMR1Q13613 665 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 PTPN21Q16825 1174 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 DUSP6Q16828 381 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 PAN2Q504Q3 1202 aaKnown RBP9.4□□□□□ -0.9
USP39-216ENST00000490193 B4GALNT3Q6L9W6 998 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 RALYLQ86SE5 291 aaKnown RBP9.4□□□□□ -0.9
USP39-216ENST00000490193 NME8Q8N427 588 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 VN1R2Q8NFZ6 395 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 NCOA7Q8NI08 942 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 RASGRP4Q8TDF6 673 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 IGDCC4Q8TDY8 1250 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 RNF25Q96BH1 459 aaPredicted RBP9.4□□□□□ -0.9
USP39-216ENST00000490193 RRP36Q96EU6 259 aaKnown RBP9.4□□□□□ -0.9
USP39-216ENST00000490193 LZTS2Q9BRK4 669 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 MTA3Q9BTC8 594 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 CELF4Q9BZC1 486 aaKnown RBP9.4□□□□□ -0.9
USP39-216ENST00000490193 FAM49AQ9H0Q0 323 aaPredicted RBP9.4□□□□□ -0.9
USP39-216ENST00000490193 TMX1Q9H3N1 280 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 RWDD1Q9H446 243 aaPredicted RBP9.4□□□□□ -0.9
USP39-216ENST00000490193 TLE6Q9H808 572 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 JADE2Q9NQC1 790 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 TLR9Q9NR96 1032 aa9.4□□□□□ -0.9
USP39-216ENST00000490193 NFASCO94856 1347 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 PROB1E7EW31 1015 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 E7EWF7 191 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 FSCN2O14926 492 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 GFRA3O60609 400 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 AVPR2P30518 371 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 KIF5BP33176 963 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 GATMP50440 423 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 VCPP55072 806 aaKnown RBP9.39□□□□□ -0.91
USP39-216ENST00000490193 ANTXR2P58335 489 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 IGBP1P78318 339 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 FOXK2Q01167 660 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 PLPPR4Q7Z2D5 763 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 RBM23Q86U06 439 aaKnown RBP9.39□□□□□ -0.91
USP39-216ENST00000490193 TEX2Q8IWB9 1127 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 ZNF654Q8IZM8 581 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 CTCFLQ8NI51 663 aaPredicted RBP9.39□□□□□ -0.91
USP39-216ENST00000490193 ZBTB10Q96DT7 871 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 RPGRIP1Q96KN7 1286 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 NEK1Q96PY6 1258 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 S1PR5Q9H228 398 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 PSTPIP2Q9H939 334 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 ERVK-5Q9HDB9 667 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 JPH1Q9HDC5 661 aaPredicted RBP9.39□□□□□ -0.91
USP39-216ENST00000490193 AAASQ9NRG9 546 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 SLC9A2Q9UBY0 812 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 SEC63Q9UGP8 760 aaKnown RBP9.39□□□□□ -0.91
USP39-216ENST00000490193 LRFN2Q9ULH4 789 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 LZTS1Q9Y250 596 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 PCDHB12Q9Y5F1 795 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 PCDHGC5Q9Y5F6 944 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 TAF6LQ9Y6J9 622 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 SPTBN4Q9H254 2564 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 EVPLQ92817 2033 aa9.39□□□□□ -0.91
USP39-216ENST00000490193 VPS13AQ96RL7 3174 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 C9IYK1 514 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 FGF18O76093 207 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 ATG7O95352 703 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 NUDT7P0C024 238 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 SRGAP2BP0DMP2 458 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 GNAQP50148 359 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 SLC26A2P50443 739 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 ERVFC1P60507 584 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 KRT76Q01546 638 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 PLCB3Q01970 1234 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 PLCB4Q15147 1175 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 SLC24A5Q71RS6 500 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 MB21D2Q8IYB1 491 aaPredicted RBP9.38□□□□□ -0.91
USP39-216ENST00000490193 PIBF1Q8WXW3 757 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 AZI2Q9H6S1 392 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 LY9Q9HBG7 655 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 RGS18Q9NS28 235 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 C1orf112Q9NSG2 853 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 LHX6Q9UPM6 363 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 PCDHB7Q9Y5E2 793 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 DCHS1Q96JQ0 3298 aa9.38□□□□□ -0.91
USP39-216ENST00000490193 IGKV6D-21A0A0A0MT36 114 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 SPDYE3A6NKU9 549 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 PER2O15055 1255 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 MGEA5O60502 916 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 IGHDP01880 384 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 HOXB8P17481 243 aaPredicted RBP9.37□□□□□ -0.91
USP39-216ENST00000490193 STAT5BP51692 787 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 ACTR2P61160 394 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 FAM189BP81408 668 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 RBM10P98175 930 aaKnown RBP9.37□□□□□ -0.91
USP39-216ENST00000490193 PTH1RQ03431 593 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 TMEM62Q0P6H9 643 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 ODR4Q5SWX8 454 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 ANKRD54Q6NXT1 300 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 SYCE2Q6PIF2 218 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 MTHFD1LQ6UB35 978 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 SRBD1Q8N5C6 995 aaKnown RBP9.37□□□□□ -0.91
USP39-216ENST00000490193 COLGALT1Q8NBJ5 622 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 MICAL1Q8TDZ2 1067 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 TRAPPC12Q8WVT3 735 aa9.37□□□□□ -0.91
USP39-216ENST00000490193 RUFY2Q8WXA3 655 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms