RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 CYP4A11Q02928 519 aa17.66■□□□□ 0.42
SYNE1-227ENST00000489156 EHHADHQ08426 723 aa17.66■□□□□ 0.42
SYNE1-227ENST00000489156 LAMC2Q13753 1193 aa17.66■□□□□ 0.42
SYNE1-227ENST00000489156 DYMQ7RTS9 669 aa17.66■□□□□ 0.42
SYNE1-227ENST00000489156 NACC1Q96RE7 527 aa17.66■□□□□ 0.42
SYNE1-227ENST00000489156 RGL1Q9NZL6 768 aa17.66■□□□□ 0.42
SYNE1-227ENST00000489156 FRMPD3Q5JV73 1810 aa17.66■□□□□ 0.42
SYNE1-227ENST00000489156 PTMAP06454 111 aaKnown RBP17.65■□□□□ 0.42
SYNE1-227ENST00000489156 P4HBP07237 508 aaKnown RBP17.65■□□□□ 0.42
SYNE1-227ENST00000489156 CCL5P13501 91 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 SFNP31947 248 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 ACTR2P61160 394 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 KRT76Q01546 638 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 MIER3Q7Z3K6 550 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 TPH2Q8IWU9 490 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 RDM1Q8NG50 284 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 AFG1LQ8WV93 481 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 DYDC2Q96IM9 177 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.65■□□□□ 0.42
SYNE1-227ENST00000489156 TCEAL9Q9UHQ7 104 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 SAMM50Q9Y512 469 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 KIAA0100Q14667 2235 aaKnown RBP17.65■□□□□ 0.42
SYNE1-227ENST00000489156 NOP56O00567 594 aaKnown RBP17.65■□□□□ 0.42
SYNE1-227ENST00000489156 CBFA2T2O43439 604 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 PGK1P00558 417 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 SSBP05455 408 aaKnown RBP eCLIP17.65■□□□□ 0.42
SYNE1-227ENST00000489156 TPM3P06753 285 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 PSMC6P62333 389 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 FANCCQ00597 558 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 STK4Q13043 487 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 ZNF746Q6NUN9 644 aaPredicted RBP17.65■□□□□ 0.42
SYNE1-227ENST00000489156 GPBP1Q86WP2 473 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 CCDC65Q8IXS2 484 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 NELFBQ8WX92 580 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 EMID1Q96A84 441 aaPredicted RBP17.65■□□□□ 0.42
SYNE1-227ENST00000489156 ZNF333Q96JL9 665 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 AP5M1Q9H0R1 490 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 RNF208Q9H0X6 261 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 KCND2Q9NZV8 630 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 CTNND2Q9UQB3 1225 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 Q9Y3F1 56 aa17.65■□□□□ 0.42
SYNE1-227ENST00000489156 FRMD3A2A2Y4 597 aa17.64■□□□□ 0.41
SYNE1-227ENST00000489156 ATP1A3P13637 1013 aa17.64■□□□□ 0.41
SYNE1-227ENST00000489156 IDEP14735 1019 aa17.64■□□□□ 0.41
SYNE1-227ENST00000489156 JAK3P52333 1124 aa17.64■□□□□ 0.41
SYNE1-227ENST00000489156 CTTNQ14247 550 aaKnown RBP17.64■□□□□ 0.41
SYNE1-227ENST00000489156 LHX8Q68G74 356 aa17.64■□□□□ 0.41
SYNE1-227ENST00000489156 ARMC5Q96C12 935 aa17.64■□□□□ 0.41
SYNE1-227ENST00000489156 GPR20Q99678 358 aa17.64■□□□□ 0.41
SYNE1-227ENST00000489156 XPNPEP3Q9NQH7 507 aa17.64■□□□□ 0.41
SYNE1-227ENST00000489156 PANK4Q9NVE7 773 aa17.64■□□□□ 0.41
SYNE1-227ENST00000489156 GSTTP1A0A1W2PQM5 241 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 BICDL2A1A5D9 508 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 SERPINC1P01008 464 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 CDK11BP21127 795 aaKnown RBP17.63■□□□□ 0.41
SYNE1-227ENST00000489156 BEX3Q00994 111 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 ARSHQ5FYA8 562 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 PPTC7Q8NI37 304 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 SEPT1Q8WYJ6 367 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 BHMT2Q9H2M3 363 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 ZSWIM4Q9H7M6 989 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 PAK6Q9NQU5 681 aaPredicted RBP17.63■□□□□ 0.41
SYNE1-227ENST00000489156 IFNKQ9P0W0 207 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 MYADML2A6NDP7 307 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 WDR64B1ANS9 1081 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 MSCO60682 206 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 LYPLA2O95372 231 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 MYCNP04198 464 aaPredicted RBP17.63■□□□□ 0.41
SYNE1-227ENST00000489156 C6orf222P0C671 652 aaPredicted RBP17.63■□□□□ 0.41
SYNE1-227ENST00000489156 STX17P56962 302 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 UBASH3AP57075 661 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 GJA9P57773 515 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 COASYQ13057 564 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 TPD52L1Q16890 204 aaPredicted RBP17.63■□□□□ 0.41
SYNE1-227ENST00000489156 CDKAL1Q5VV42 579 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 FOXR2Q6PJQ5 311 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 ABHD15Q6UXT9 468 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 DRC7Q8IY82 874 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 SMAP1Q8IYB5 467 aaPredicted RBP17.63■□□□□ 0.41
SYNE1-227ENST00000489156 GUF1Q8N442 669 aaKnown RBP17.63■□□□□ 0.41
SYNE1-227ENST00000489156 KIAA0895Q8NCT3 520 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 LXNQ9BS40 222 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 MAPK8IP1Q9UQF2 711 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 PCDHA10Q9Y5I2 948 aa17.63■□□□□ 0.41
SYNE1-227ENST00000489156 LOXHD1Q8IVV2 1947 aa17.62■□□□□ 0.41
SYNE1-227ENST00000489156 ATG7O95352 703 aa17.62■□□□□ 0.41
SYNE1-227ENST00000489156 KRT18P05783 430 aaKnown RBP17.62■□□□□ 0.41
SYNE1-227ENST00000489156 MMP3P08254 477 aa17.62■□□□□ 0.41
SYNE1-227ENST00000489156 CCNE1P24864 410 aa17.62■□□□□ 0.41
SYNE1-227ENST00000489156 TCF7P36402 384 aaPredicted RBP17.62■□□□□ 0.41
SYNE1-227ENST00000489156 QARSP47897 775 aaKnown RBP17.62■□□□□ 0.41
SYNE1-227ENST00000489156 DEFB118Q96PH6 123 aa17.62■□□□□ 0.41
SYNE1-227ENST00000489156 CTAGE1Q96RT6 745 aa17.62■□□□□ 0.41
SYNE1-227ENST00000489156 XPO4Q9C0E2 1151 aaKnown RBP17.62■□□□□ 0.41
SYNE1-227ENST00000489156 SAMSN1Q9NSI8 373 aaKnown RBP17.62■□□□□ 0.41
SYNE1-227ENST00000489156 A6NJR5 290 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 ADAMTS4O75173 837 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 SPAG1Q07617 926 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 GIT2Q14161 759 aa17.61■□□□□ 0.41
SYNE1-227ENST00000489156 FSCN1Q16658 493 aaKnown RBP17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms