RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 BMS1Q14692 1282 aaKnown RBP10.67□□□□□ -0.7
COL17A1-207ENST00000488320 ODR4Q5SWX8 454 aa10.67□□□□□ -0.7
COL17A1-207ENST00000488320 IFIT1BQ5T764 474 aaKnown RBP10.67□□□□□ -0.7
COL17A1-207ENST00000488320 SLC24A5Q71RS6 500 aa10.67□□□□□ -0.7
COL17A1-207ENST00000488320 NME8Q8N427 588 aa10.67□□□□□ -0.7
COL17A1-207ENST00000488320 C12orf76Q8N812 135 aaPredicted RBP10.67□□□□□ -0.7
COL17A1-207ENST00000488320 MTMR8Q96EF0 704 aa10.67□□□□□ -0.7
COL17A1-207ENST00000488320 PIGSQ96S52 555 aa10.67□□□□□ -0.7
COL17A1-207ENST00000488320 ADAM2Q99965 735 aa10.67□□□□□ -0.7
COL17A1-207ENST00000488320 UBAC1Q9BSL1 405 aa10.67□□□□□ -0.7
COL17A1-207ENST00000488320 TMX1Q9H3N1 280 aa10.67□□□□□ -0.7
COL17A1-207ENST00000488320 CYP26B1Q9NR63 512 aa10.67□□□□□ -0.7
COL17A1-207ENST00000488320 C1orf112Q9NSG2 853 aa10.67□□□□□ -0.7
COL17A1-207ENST00000488320 ZSWIM5Q9P217 1185 aa10.67□□□□□ -0.7
COL17A1-207ENST00000488320 HCSTQ9UBK5 93 aa10.67□□□□□ -0.7
COL17A1-207ENST00000488320 HCFC2Q9Y5Z7 792 aa10.67□□□□□ -0.7
COL17A1-207ENST00000488320 EOMESO95936 686 aa10.66□□□□□ -0.7
COL17A1-207ENST00000488320 NPR3P17342 541 aa10.66□□□□□ -0.7
COL17A1-207ENST00000488320 MFAP1P55081 439 aaKnown RBP10.66□□□□□ -0.7
COL17A1-207ENST00000488320 NMIQ13287 307 aaPredicted RBP10.66□□□□□ -0.7
COL17A1-207ENST00000488320 TDGQ13569 410 aa10.66□□□□□ -0.7
COL17A1-207ENST00000488320 SMC1AQ14683 1233 aaKnown RBP10.66□□□□□ -0.7
COL17A1-207ENST00000488320 RSPO4Q2I0M5 234 aaPredicted RBP10.66□□□□□ -0.7
COL17A1-207ENST00000488320 ZNF589Q86UQ0 364 aaPredicted RBP10.66□□□□□ -0.7
COL17A1-207ENST00000488320 SIX5Q8N196 739 aa10.66□□□□□ -0.7
COL17A1-207ENST00000488320 SMARCC2Q8TAQ2 1214 aa10.66□□□□□ -0.7
COL17A1-207ENST00000488320 RIN2Q8WYP3 895 aaPredicted RBP10.66□□□□□ -0.7
COL17A1-207ENST00000488320 CUL5Q93034 780 aa10.66□□□□□ -0.7
COL17A1-207ENST00000488320 CDHR1Q96JP9 859 aa10.66□□□□□ -0.7
COL17A1-207ENST00000488320 AZI2Q9H6S1 392 aa10.66□□□□□ -0.7
COL17A1-207ENST00000488320 CWH43Q9H720 699 aa10.66□□□□□ -0.7
COL17A1-207ENST00000488320 RGS18Q9NS28 235 aa10.66□□□□□ -0.7
COL17A1-207ENST00000488320 PKD2L1Q9P0L9 805 aa10.66□□□□□ -0.7
COL17A1-207ENST00000488320 MAD2L2Q9UI95 211 aa10.66□□□□□ -0.7
COL17A1-207ENST00000488320 USTQ9Y2C2 406 aa10.66□□□□□ -0.7
COL17A1-207ENST00000488320 PCDHA2Q9Y5H9 948 aa10.66□□□□□ -0.7
COL17A1-207ENST00000488320 GVINP1Q7Z2Y8 2422 aa10.66□□□□□ -0.7
COL17A1-207ENST00000488320 BAZ2BQ9UIF8 2168 aaKnown RBP10.65□□□□□ -0.7
COL17A1-207ENST00000488320 PNMA6FA0A0J9YX94 578 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 SPDYE4A6NLX3 237 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 MGEA5O60502 916 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 ATP9AO75110 1047 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 CLASP2O75122 1294 aaKnown RBP10.65□□□□□ -0.7
COL17A1-207ENST00000488320 CXCL14O95715 111 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 FGFR1P11362 822 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 PDE4AP27815 886 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 PCNX4Q63HM2 1172 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 KIAA1841Q6NSI8 718 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 KANK3Q6NY19 840 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 XRRA1Q6P2D8 792 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 ZC3H14Q6PJT7 736 aaKnown RBP10.65□□□□□ -0.7
COL17A1-207ENST00000488320 KCNT2Q6UVM3 1135 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 DCLK2Q8N568 766 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 MRPL43Q8N983 215 aaKnown RBP10.65□□□□□ -0.7
COL17A1-207ENST00000488320 TRAPPC12Q8WVT3 735 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 PIBF1Q8WXW3 757 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 RUBCNQ92622 972 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 ZNF558Q96NG5 402 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 ERVK-5Q9HDB9 667 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 SPG21Q9NZD8 308 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 ST3GAL5Q9UNP4 418 aa10.65□□□□□ -0.7
COL17A1-207ENST00000488320 NOC2LQ9Y3T9 749 aaKnown RBP10.65□□□□□ -0.7
COL17A1-207ENST00000488320 EP300Q09472 2414 aaPredicted RBP10.64□□□□□ -0.71
COL17A1-207ENST00000488320 SMIM35A0A1B0GVV1 85 aa10.64□□□□□ -0.71
COL17A1-207ENST00000488320 PALM3A6NDB9 673 aaPredicted RBP10.64□□□□□ -0.71
COL17A1-207ENST00000488320 C2orf71A6NGG8 1288 aa10.64□□□□□ -0.71
COL17A1-207ENST00000488320 GPR182O15218 404 aa10.64□□□□□ -0.71
COL17A1-207ENST00000488320 ARP10275 920 aa10.64□□□□□ -0.71
COL17A1-207ENST00000488320 PPM1AP35813 382 aa10.64□□□□□ -0.71
COL17A1-207ENST00000488320 PBX3P40426 434 aa10.64□□□□□ -0.71
COL17A1-207ENST00000488320 C20orf194Q5TEA3 1177 aa10.64□□□□□ -0.71
COL17A1-207ENST00000488320 FAM43BQ6ZT52 329 aaPredicted RBP10.64□□□□□ -0.71
COL17A1-207ENST00000488320 ABI1Q8IZP0 508 aa10.64□□□□□ -0.71
COL17A1-207ENST00000488320 RILPL2Q969X0 211 aa10.64□□□□□ -0.71
COL17A1-207ENST00000488320 KRT23Q9C075 422 aa10.64□□□□□ -0.71
COL17A1-207ENST00000488320 TMEM117Q9H0C3 514 aa10.64□□□□□ -0.71
COL17A1-207ENST00000488320 DZANK1Q9NVP4 752 aa10.64□□□□□ -0.71
COL17A1-207ENST00000488320 TMEM161AQ9NX61 479 aa10.64□□□□□ -0.71
COL17A1-207ENST00000488320 DLL3Q9NYJ7 618 aa10.64□□□□□ -0.71
COL17A1-207ENST00000488320 FRMPD4Q14CM0 1322 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 KDM3AQ9Y4C1 1321 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 C9IYK1 514 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 HOXA2O43364 376 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 KCNA2P16389 499 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 SDHBP21912 280 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 PLCB4Q15147 1175 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 ST3GAL2Q16842 350 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 SPECC1Q5M775 1068 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 ANKRD45Q5TZF3 282 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 USP17L6PQ6QN14 398 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 MTHFD1LQ6UB35 978 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 TMC5Q6UXY8 1006 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 OTOP3Q7RTS5 596 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 CABP7Q86V35 215 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 GPRASP2Q96D09 838 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 CHAMP1Q96JM3 812 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 RIOX1Q9H6W3 641 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 ELAC1Q9H777 363 aaKnown RBP10.63□□□□□ -0.71
COL17A1-207ENST00000488320 KCNK12Q9HB15 430 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 CDHR5Q9HBB8 845 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms