RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 RUSC1Q9BVN2 902 aa8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 DIAPH3Q9NSV4 1193 aa8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 ISY1Q9ULR0 285 aaKnown RBP8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 STX8Q9UNK0 236 aa8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 DIS3Q9Y2L1 958 aaKnown RBP8.02□□□□□ -1.13
CCDC88A-213ENST00000476903 SEPT4O43236 478 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 NMT2O60551 498 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 PGK2P07205 417 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 FGRP09769 529 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 PCP11498 1178 aaKnown RBP8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 STAT2P52630 851 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 OAZ1P54368 228 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 IKQ13123 557 aaPredicted RBP8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 ZNF792Q3KQV3 632 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 TTC39BQ5VTQ0 682 aaPredicted RBP8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 C16orf46Q6P387 395 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 FAM160B2Q86V87 743 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 C7orf61Q8IZ16 206 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 CPXCR1Q8N123 301 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 TRPV1Q8NER1 839 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 FAM200AQ8TCP9 573 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 CHURC1Q8WUH1 139 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 PRIMPOLQ96LW4 560 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 SLC38A10Q9HBR0 1119 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 INCENPQ9NQS7 918 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 TOMM22Q9NS69 142 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 NRBP1Q9UHY1 535 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 PFASO15067 1338 aa8.01□□□□□ -1.13
CCDC88A-213ENST00000476903 TRIOBPQ9H2D6 2365 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 MYH6P13533 1939 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 TMEM232C9JQI7 657 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 DNM1LO00429 736 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 PLA2G6O60733 806 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 COL6A1P12109 1028 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 MCCP23508 829 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 NOVP48745 357 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 NLRP12P59046 1061 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 HAND2P61296 217 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 CPSF6Q16630 551 aaKnown RBP eCLIP8□□□□□ -1.13
CCDC88A-213ENST00000476903 RRP12Q5JTH9 1297 aaKnown RBP8□□□□□ -1.13
CCDC88A-213ENST00000476903 AKNAD1Q5T1N1 836 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 RCSD1Q6JBY9 416 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 CWC27Q6UX04 472 aaKnown RBP8□□□□□ -1.13
CCDC88A-213ENST00000476903 CAPN12Q6ZSI9 719 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 MFSD6Q6ZSS7 791 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 MSL3Q8N5Y2 521 aaKnown RBP8□□□□□ -1.13
CCDC88A-213ENST00000476903 ARRDC4Q8NCT1 418 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 CHST13Q8NET6 341 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 STAG1Q8WVM7 1258 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 DDX11Q96FC9 970 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 FBXL18Q96ME1 805 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 RNF41Q9H4P4 317 aaPredicted RBP8□□□□□ -1.13
CCDC88A-213ENST00000476903 RAVER2Q9HCJ3 691 aaKnown RBP8□□□□□ -1.13
CCDC88A-213ENST00000476903 IL17RBQ9NRM6 502 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 TCP11L1Q9NUJ3 509 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 ABI2Q9NYB9 513 aaPredicted RBP8□□□□□ -1.13
CCDC88A-213ENST00000476903 FBXO40Q9UH90 709 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 RIPK3Q9Y572 518 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 TACC3Q9Y6A5 838 aa8□□□□□ -1.13
CCDC88A-213ENST00000476903 DNAJC25-GNG10A0A024R161 153 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 KBTBD13C9JR72 458 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 ZNF213O14771 459 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 ZBTB39O15060 712 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 TIAF1O95411 115 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 TOP1P11387 765 aaKnown RBP7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 ACPPP15309 386 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 NT5C2P49902 561 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 IRX6P78412 446 aaPredicted RBP7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 CCDC96Q2M329 555 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 PRAMEF19Q5SWL8 479 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 FDX2Q6P4F2 183 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 VSIG10LQ86VR7 867 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 ANKRD35Q8N283 1001 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 FBXL6Q8N531 539 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 DCAF4Q8WV16 495 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 CHMP4CQ96CF2 233 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 TINF2Q9BSI4 451 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 TMPRSS13Q9BYE2 586 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 KRTAP4-11Q9BYQ6 195 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 SENP6Q9GZR1 1112 aaPredicted RBP7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 SALL4Q9UJQ4 1053 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 CNPY2Q9Y2B0 182 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 GTF3C3Q9Y5Q9 886 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 SYNGAP1Q96PV0 1343 aa7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 RANBP2P49792 3224 aaKnown RBP7.99□□□□□ -1.13
CCDC88A-213ENST00000476903 LCTP09848 1927 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 RARBP10826 455 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 AKR1A1P14550 325 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 JUNBP17275 347 aaPredicted RBP7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 ADMP35318 185 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 FXR1P51114 621 aaKnown RBP eCLIP7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 LRRC26Q2I0M4 334 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 TKFCQ3LXA3 575 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 GJC2Q5T442 439 aaPredicted RBP7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 TTC22Q5TAA0 569 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 ANO1Q5XXA6 986 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 MAMDC4Q6UXC1 1216 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 KCTD1Q719H9 257 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 TBC1D10CQ8IV04 446 aa7.98□□□□□ -1.13
CCDC88A-213ENST00000476903 ESR2Q92731 530 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms