RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 ZIC2O95409 532 aaPredicted RBP9.39□□□□□ -0.91
USP54-211ENST00000474929 NR3C2P08235 984 aa9.39□□□□□ -0.91
USP54-211ENST00000474929 GLULP15104 373 aa9.39□□□□□ -0.91
USP54-211ENST00000474929 UBA1P22314 1058 aaKnown RBP9.39□□□□□ -0.91
USP54-211ENST00000474929 PDE4AP27815 886 aa9.39□□□□□ -0.91
USP54-211ENST00000474929 GBP2P32456 591 aaPredicted RBP9.39□□□□□ -0.91
USP54-211ENST00000474929 CNR2P34972 360 aa9.39□□□□□ -0.91
USP54-211ENST00000474929 ATP8B2P98198 1209 aa9.39□□□□□ -0.91
USP54-211ENST00000474929 PFKPQ01813 784 aa9.39□□□□□ -0.91
USP54-211ENST00000474929 SOWAHCQ53LP3 525 aaPredicted RBP9.39□□□□□ -0.91
USP54-211ENST00000474929 HSP90AB4PQ58FF6 505 aa9.39□□□□□ -0.91
USP54-211ENST00000474929 KCNT2Q6UVM3 1135 aa9.39□□□□□ -0.91
USP54-211ENST00000474929 TMC5Q6UXY8 1006 aa9.39□□□□□ -0.91
USP54-211ENST00000474929 SYTL5Q8TDW5 730 aaPredicted RBP9.39□□□□□ -0.91
USP54-211ENST00000474929 TNPO1Q92973 898 aaKnown RBP9.39□□□□□ -0.91
USP54-211ENST00000474929 TMEM121BQ9BXQ6 578 aaPredicted RBP9.39□□□□□ -0.91
USP54-211ENST00000474929 FOXQ1Q9C009 403 aa9.39□□□□□ -0.91
USP54-211ENST00000474929 BCAS3Q9H6U6 928 aa9.39□□□□□ -0.91
USP54-211ENST00000474929 TYW1Q9NV66 732 aaKnown RBP9.39□□□□□ -0.91
USP54-211ENST00000474929 DACH1Q9UI36 760 aa9.39□□□□□ -0.91
USP54-211ENST00000474929 TUBE1Q9UJT0 475 aa9.39□□□□□ -0.91
USP54-211ENST00000474929 MRPS17Q9Y2R5 130 aaKnown RBP9.39□□□□□ -0.91
USP54-211ENST00000474929 FRMPD2Q68DX3 1309 aaPredicted RBP9.38□□□□□ -0.91
USP54-211ENST00000474929 IGSF9BQ9UPX0 1349 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 SMG1Q96Q15 3661 aaKnown RBP9.38□□□□□ -0.91
USP54-211ENST00000474929 DENND3A2RUS2 1198 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 TSPY2A6NKD2 308 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 PRDM1O75626 825 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 KCNK5O95279 499 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 HSPD1P10809 573 aaKnown RBP9.38□□□□□ -0.91
USP54-211ENST00000474929 POLGP54098 1239 aaPredicted RBP9.38□□□□□ -0.91
USP54-211ENST00000474929 TFAP4Q01664 338 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 NEDD9Q14511 834 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 UBXN2BQ14CS0 331 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 GNPTABQ3T906 1256 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 ZBTB41Q5SVQ8 909 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 ABI1Q8IZP0 508 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 STK11IPQ8N1F8 1099 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 GLIS3Q8NEA6 775 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 CMASQ8NFW8 434 aaPredicted RBP9.38□□□□□ -0.91
USP54-211ENST00000474929 GATA6Q92908 595 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 DDX23Q9BUQ8 820 aaKnown RBP9.38□□□□□ -0.91
USP54-211ENST00000474929 NACAP1Q9BZK3 213 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 TMEM117Q9H0C3 514 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 CWH43Q9H720 699 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 ELAC1Q9H777 363 aaKnown RBP9.38□□□□□ -0.91
USP54-211ENST00000474929 ATP6V0A4Q9HBG4 840 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 TMEM161AQ9NX61 479 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.38□□□□□ -0.913e-8■■■□□ 17.9
USP54-211ENST00000474929 PADI3Q9ULW8 664 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 TRPV2Q9Y5S1 764 aa9.38□□□□□ -0.91
USP54-211ENST00000474929 ZFP37Q9Y6Q3 630 aaPredicted RBP9.38□□□□□ -0.91
USP54-211ENST00000474929 DSPP15924 2871 aaKnown RBP9.38□□□□□ -0.91
USP54-211ENST00000474929 CLUHO75153 1309 aa9.37□□□□□ -0.91
USP54-211ENST00000474929 TM4SF5O14894 197 aa9.37□□□□□ -0.91
USP54-211ENST00000474929 EIF2AK2P19525 551 aaKnown RBP9.37□□□□□ -0.91
USP54-211ENST00000474929 SLC16A2P36021 539 aa9.37□□□□□ -0.91
USP54-211ENST00000474929 MLF2Q15773 248 aaPredicted RBP9.37□□□□□ -0.91
USP54-211ENST00000474929 METTL7BQ6UX53 244 aa9.37□□□□□ -0.91
USP54-211ENST00000474929 SLC24A5Q71RS6 500 aa9.37□□□□□ -0.91
USP54-211ENST00000474929 CLASRPQ8N2M8 674 aaKnown RBP9.37□□□□□ -0.91
USP54-211ENST00000474929 C12orf76Q8N812 135 aaPredicted RBP9.37□□□□□ -0.91
USP54-211ENST00000474929 MAP4K1Q92918 833 aa9.37□□□□□ -0.91
USP54-211ENST00000474929 TMEM169Q96HH4 297 aa9.37□□□□□ -0.91
USP54-211ENST00000474929 LSM14BQ9BX40 385 aaKnown RBP9.37□□□□□ -0.91
USP54-211ENST00000474929 AGO3Q9H9G7 860 aaKnown RBP9.37□□□□□ -0.91
USP54-211ENST00000474929 PXMP2Q9NR77 195 aa9.37□□□□□ -0.91
USP54-211ENST00000474929 MAP3K20Q9NYL2 800 aaKnown RBP9.37□□□□□ -0.91
USP54-211ENST00000474929 KDM3AQ9Y4C1 1321 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 RALGAPA1Q6GYQ0 2036 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 MBLAC1A4D2B0 266 aaPredicted RBP9.36□□□□□ -0.91
USP54-211ENST00000474929 FAM170BA6NMN3 283 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 IPO8O15397 1037 aaKnown RBP9.36□□□□□ -0.91
USP54-211ENST00000474929 GDF9O60383 454 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 STAM2O75886 525 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 EPCAMP16422 314 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 GATMP50440 423 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 CCR3P51677 355 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 ZNF252P-AS1Q0IIN9 211 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 FOXC1Q12948 553 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 PPFIA1Q13136 1202 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 SIM2Q14190 667 aaPredicted RBP9.36□□□□□ -0.91
USP54-211ENST00000474929 USH1GQ495M9 461 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 PSAPL1Q6NUJ1 521 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 RTN4RL1Q86UN2 441 aaPredicted RBP9.36□□□□□ -0.91
USP54-211ENST00000474929 PDZD3Q86UT5 571 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 SAMD3Q8N6K7 520 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 CLDN23Q96B33 292 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 TAAR1Q96RJ0 339 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 STRBPQ96SI9 672 aaKnown RBP9.36□□□□□ -0.91
USP54-211ENST00000474929 EMILIN2Q9BXX0 1053 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 MRPL9Q9BYD2 267 aaKnown RBP9.36□□□□□ -0.91
USP54-211ENST00000474929 WDR6Q9NNW5 1121 aaKnown RBP9.36□□□□□ -0.91
USP54-211ENST00000474929 LTB4R2Q9NPC1 389 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 MRPL11Q9Y3B7 192 aaKnown RBP9.36□□□□□ -0.91
USP54-211ENST00000474929 ITPR1Q14643 2758 aa9.36□□□□□ -0.91
USP54-211ENST00000474929 IGSF10Q6WRI0 2623 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 GREB1Q4ZG55 1949 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 GSG1L2A8MUP6 293 aa9.35□□□□□ -0.91
USP54-211ENST00000474929 CXCL14O95715 111 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms