RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 DNAJC18Q9H819 358 aa10.54□□□□□ -0.72
HDAC3-205ENST00000469550 SH3GLB2Q9NR46 395 aa10.54□□□□□ -0.72
HDAC3-205ENST00000469550 GJD2Q9UKL4 321 aa10.54□□□□□ -0.72
HDAC3-205ENST00000469550 NR2E3Q9Y5X4 410 aa10.54□□□□□ -0.72
HDAC3-205ENST00000469550 CAPN6Q9Y6Q1 641 aa10.54□□□□□ -0.72
HDAC3-205ENST00000469550 ABCB11O95342 1321 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 A0A1W2PPC1 479 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 C19orf81C9J6K1 198 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 LAD1O00515 517 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 CHUKO15111 745 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 KIF1CO43896 1103 aaKnown RBP10.53□□□□□ -0.72
HDAC3-205ENST00000469550 HMGCRP04035 888 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 CCDC172P0C7W6 258 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 LSP1P33241 339 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 SMTNP53814 917 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 BACE1P56817 501 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 NLRP5P59047 1200 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 PAK2Q13177 524 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 MIIPQ5JXC2 388 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 CFAP58Q5T655 872 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 C8orf74Q6P047 294 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 ADGRA1Q86SQ6 560 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 ANKLE1Q8NAG6 615 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 EDEM3Q9BZQ6 932 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 SAMM50Q9Y512 469 aa10.53□□□□□ -0.72
HDAC3-205ENST00000469550 HMGB1P1B2RPK0 211 aaPredicted RBP10.52□□□□□ -0.72
HDAC3-205ENST00000469550 PPP1R37O75864 691 aa10.52□□□□□ -0.72
HDAC3-205ENST00000469550 KIF11P52732 1056 aa10.52□□□□□ -0.72
HDAC3-205ENST00000469550 PDCLQ13371 301 aa10.52□□□□□ -0.72
HDAC3-205ENST00000469550 CFAP221Q4G0U5 840 aa10.52□□□□□ -0.72
HDAC3-205ENST00000469550 NAA35Q5VZE5 725 aa10.52□□□□□ -0.72
HDAC3-205ENST00000469550 PPP4R3AQ6IN85 833 aa10.52□□□□□ -0.72
HDAC3-205ENST00000469550 CHRDL2Q6WN34 429 aa10.52□□□□□ -0.72
HDAC3-205ENST00000469550 DTHD1Q6ZMT9 781 aa10.52□□□□□ -0.72
HDAC3-205ENST00000469550 SRBD1Q8N5C6 995 aaKnown RBP10.52□□□□□ -0.72
HDAC3-205ENST00000469550 GPATCH11Q8N954 259 aa10.52□□□□□ -0.72
HDAC3-205ENST00000469550 WHAMMQ8TF30 809 aa10.52□□□□□ -0.72
HDAC3-205ENST00000469550 GTF3C2Q8WUA4 911 aaPredicted RBP10.52□□□□□ -0.72
HDAC3-205ENST00000469550 CNOT6LQ96LI5 555 aaKnown RBP10.52□□□□□ -0.72
HDAC3-205ENST00000469550 NOC4LQ9BVI4 516 aaKnown RBP10.52□□□□□ -0.72
HDAC3-205ENST00000469550 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.52□□□□□ -0.72
HDAC3-205ENST00000469550 ARHGAP20Q9P2F6 1191 aa10.52□□□□□ -0.72
HDAC3-205ENST00000469550 CEP290O15078 2479 aa10.52□□□□□ -0.72
HDAC3-205ENST00000469550 hCG_1642624A0A1W2PR95 340 aa10.52□□□□□ -0.73
HDAC3-205ENST00000469550 GRID2IPA4D2P6 1211 aa10.52□□□□□ -0.73
HDAC3-205ENST00000469550 MINDY4BA8MYZ0 360 aa10.52□□□□□ -0.73
HDAC3-205ENST00000469550 H0YHG0 523 aa10.52□□□□□ -0.73
HDAC3-205ENST00000469550 PRPHP41219 470 aa10.52□□□□□ -0.73
HDAC3-205ENST00000469550 MTIF2P46199 727 aaKnown RBP10.52□□□□□ -0.73
HDAC3-205ENST00000469550 SLC7A5Q01650 507 aa10.52□□□□□ -0.73
HDAC3-205ENST00000469550 ACTN3Q08043 901 aaPredicted RBP10.52□□□□□ -0.73
HDAC3-205ENST00000469550 MTMR2Q13614 643 aa10.52□□□□□ -0.73
HDAC3-205ENST00000469550 PTGISQ16647 500 aa10.52□□□□□ -0.73
HDAC3-205ENST00000469550 ZNF473Q8WTR7 871 aaKnown RBP10.52□□□□□ -0.73
HDAC3-205ENST00000469550 TGFBRAP1Q8WUH2 860 aa10.52□□□□□ -0.73
HDAC3-205ENST00000469550 RNPC3Q96LT9 517 aaKnown RBP10.52□□□□□ -0.73
HDAC3-205ENST00000469550 DEFB118Q96PH6 123 aa10.52□□□□□ -0.73
HDAC3-205ENST00000469550 VCPKMTQ9H867 229 aa10.52□□□□□ -0.73
HDAC3-205ENST00000469550 DONSONQ9NYP3 566 aa10.52□□□□□ -0.73
HDAC3-205ENST00000469550 TMOD4Q9NZQ9 345 aa10.52□□□□□ -0.73
HDAC3-205ENST00000469550 SSU72P8A0A1W2PR75 194 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 ZNF233A6NK53 670 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 MOCS3O95396 460 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 FAM107AO95990 144 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 MDH1P40925 334 aaKnown RBP10.51□□□□□ -0.73
HDAC3-205ENST00000469550 UBA7P41226 1012 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 KLK7P49862 253 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 JAG1P78504 1218 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 ANKRD40Q6AI12 368 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 NFRKBQ6P4R8 1299 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 C6orf89Q6UWU4 347 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 MAPKAPK5Q8IW41 473 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 BLIDQ8IZY5 108 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 ARFGAP2Q8N6H7 521 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 ATP6V1G3Q96LB4 118 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 PCMTD1Q96MG8 357 aaPredicted RBP10.51□□□□□ -0.73
HDAC3-205ENST00000469550 NOX5Q96PH1 765 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 C7orf25Q9BPX7 421 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 TLR10Q9BXR5 811 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 ACTR5Q9H9F9 607 aaPredicted RBP10.51□□□□□ -0.73
HDAC3-205ENST00000469550 MLXIPQ9HAP2 919 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 ZBTB21Q9ULJ3 1066 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 SIK3Q9Y2K2 1263 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 NAV1Q8NEY1 1877 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 TRIOBPQ9H2D6 2365 aa10.51□□□□□ -0.73
HDAC3-205ENST00000469550 RPTORQ8N122 1335 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 MAGEB6P1A0A0J9YX57 407 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 TMCO5BA8MYB1 307 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 RBAK-RBAKDNI3L0D1 243 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 ORC4O43929 436 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 RASSF9O75901 435 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 HLA-DOAP06340 250 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 XRCC5P13010 732 aaKnown RBP10.5□□□□□ -0.73
HDAC3-205ENST00000469550 NR1D1P20393 614 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 CYP7A1P22680 504 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 EIF4A3P38919 411 aaKnown RBP10.5□□□□□ -0.73
HDAC3-205ENST00000469550 MAGEA1P43355 309 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 PSEN1P49768 467 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 NT5C2P49902 561 aa10.5□□□□□ -0.73
HDAC3-205ENST00000469550 ASTE1Q2TB18 679 aaPredicted RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms