RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 SEPT9Q9UHD8 586 aaPredicted RBP22.78■■□□□ 1.24
SKA3-205ENST00000465471 LAMA3Q16787 3333 aa22.77■■□□□ 1.24
SKA3-205ENST00000465471 BMP15O95972 392 aa22.77■■□□□ 1.24
SKA3-205ENST00000465471 CXCL10P02778 98 aa22.77■■□□□ 1.24
SKA3-205ENST00000465471 PFKMP08237 780 aa22.77■■□□□ 1.24
SKA3-205ENST00000465471 MGAT3Q09327 533 aa22.77■■□□□ 1.24
SKA3-205ENST00000465471 TMEM240Q5SV17 173 aa22.77■■□□□ 1.24
SKA3-205ENST00000465471 FAM173BQ6P4H8 233 aa22.77■■□□□ 1.24
SKA3-205ENST00000465471 TDHQ8IZJ6 230 aa22.77■■□□□ 1.24
SKA3-205ENST00000465471 DNAJB3Q8WWF6 145 aa22.77■■□□□ 1.24
SKA3-205ENST00000465471 POLR3CQ9BUI4 534 aaPredicted RBP22.77■■□□□ 1.24
SKA3-205ENST00000465471 TUFT1Q9NNX1 390 aa22.77■■□□□ 1.24
SKA3-205ENST00000465471 IGKV6-21A0A0C4DH24 114 aa22.76■■□□□ 1.23
SKA3-205ENST00000465471 RSPH10B2B2RC85 870 aa22.76■■□□□ 1.23
SKA3-205ENST00000465471 MAGEB2O15479 319 aa22.76■■□□□ 1.23
SKA3-205ENST00000465471 NBNO60934 754 aa22.76■■□□□ 1.23
SKA3-205ENST00000465471 MED24O75448 989 aa22.76■■□□□ 1.23
SKA3-205ENST00000465471 RSPH10BP0C881 870 aa22.76■■□□□ 1.23
SKA3-205ENST00000465471 ZSCAN22P10073 491 aaPredicted RBP22.76■■□□□ 1.23
SKA3-205ENST00000465471 YWHABP31946 246 aaKnown RBP22.76■■□□□ 1.23
SKA3-205ENST00000465471 PKP1Q13835 747 aa22.76■■□□□ 1.23
SKA3-205ENST00000465471 SF3A1Q15459 793 aaKnown RBP22.76■■□□□ 1.23
SKA3-205ENST00000465471 C9orf50Q5SZB4 431 aa22.76■■□□□ 1.23
SKA3-205ENST00000465471 PSRC1Q6PGN9 363 aaPredicted RBP22.76■■□□□ 1.23
SKA3-205ENST00000465471 DTHD1Q6ZMT9 781 aa22.76■■□□□ 1.23
SKA3-205ENST00000465471 RSPH3Q86UC2 560 aa22.76■■□□□ 1.23
SKA3-205ENST00000465471 TPH2Q8IWU9 490 aa22.76■■□□□ 1.23
SKA3-205ENST00000465471 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.76■■□□□ 1.236e-14■■■■□ 20.1
SKA3-205ENST00000465471 PPME1Q9Y570 386 aa22.76■■□□□ 1.23
SKA3-205ENST00000465471 DDX11L8A8MPP1 907 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 CHRNA1P02708 482 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 CTSHP09668 335 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 ACRP10323 421 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 RPA1P27694 616 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 PTPAQ15257 358 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 SHHQ15465 462 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 MTERF2Q49AM1 385 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 RASIP1Q5U651 963 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 PLA2G4FQ68DD2 849 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 CATSPER3Q86XQ3 398 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 RPUSD2Q8IZ73 545 aaKnown RBP22.75■■□□□ 1.23
SKA3-205ENST00000465471 KIAA0319LQ8IZA0 1049 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 NME8Q8N427 588 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 ERMNQ8TAM6 284 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 RAB34Q9BZG1 259 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 FTOQ9C0B1 505 aaKnown RBP eCLIP22.75■■□□□ 1.23
SKA3-205ENST00000465471 FAM49AQ9H0Q0 323 aaPredicted RBP22.75■■□□□ 1.23
SKA3-205ENST00000465471 CYP26B1Q9NR63 512 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 LRWD1Q9UFC0 647 aa22.75■■□□□ 1.23
SKA3-205ENST00000465471 MORC2Q9Y6X9 1032 aaPredicted RBP22.75■■□□□ 1.23
SKA3-205ENST00000465471 MUTP22033 750 aa22.74■■□□□ 1.23
SKA3-205ENST00000465471 MRPS6P82932 125 aaKnown RBP22.74■■□□□ 1.23
SKA3-205ENST00000465471 HAUS3Q68CZ6 603 aa22.74■■□□□ 1.23
SKA3-205ENST00000465471 ZNF365Q70YC5 407 aa22.74■■□□□ 1.23
SKA3-205ENST00000465471 SH2D3AQ9BRG2 576 aa22.74■■□□□ 1.23
SKA3-205ENST00000465471 CLIC4Q9Y696 253 aa22.74■■□□□ 1.23
SKA3-205ENST00000465471 KDM3AQ9Y4C1 1321 aa22.74■■□□□ 1.23
SKA3-205ENST00000465471 ZBTB39O15060 712 aa22.73■■□□□ 1.23
SKA3-205ENST00000465471 MAFO75444 373 aaPredicted RBP22.73■■□□□ 1.23
SKA3-205ENST00000465471 F13A1P00488 732 aa22.73■■□□□ 1.23
SKA3-205ENST00000465471 NPEPPSP55786 919 aa22.73■■□□□ 1.23
SKA3-205ENST00000465471 TBC1D8BQ0IIM8 1120 aa22.73■■□□□ 1.23
SKA3-205ENST00000465471 DEFB128Q7Z7B8 93 aa22.73■■□□□ 1.23
SKA3-205ENST00000465471 ZNF579Q8NAF0 562 aaKnown RBP22.73■■□□□ 1.23
SKA3-205ENST00000465471 OSBPL7Q9BZF2 842 aa22.73■■□□□ 1.23
SKA3-205ENST00000465471 ANKEF1Q9NU02 776 aa22.73■■□□□ 1.23
SKA3-205ENST00000465471 STK24Q9Y6E0 443 aa22.73■■□□□ 1.23
SKA3-205ENST00000465471 XRCC6P12956 609 aaKnown RBP eCLIP22.72■■□□□ 1.23
SKA3-205ENST00000465471 CLCN3P51790 818 aa22.72■■□□□ 1.23
SKA3-205ENST00000465471 MKRN4PQ13434 485 aaPredicted RBP22.72■■□□□ 1.23
SKA3-205ENST00000465471 EFCAB12Q6NXP0 572 aa22.72■■□□□ 1.23
SKA3-205ENST00000465471 OTUD6AQ7L8S5 288 aa22.72■■□□□ 1.23
SKA3-205ENST00000465471 HERVK_113Q902F9 699 aa22.72■■□□□ 1.23
SKA3-205ENST00000465471 CEP170P1Q96L14 293 aa22.72■■□□□ 1.23
SKA3-205ENST00000465471 USP28Q96RU2 1077 aa22.72■■□□□ 1.23
SKA3-205ENST00000465471 MMTAG2Q9BU76 263 aaKnown RBP22.72■■□□□ 1.23
SKA3-205ENST00000465471 DHX33Q9H6R0 707 aaKnown RBP22.72■■□□□ 1.23
SKA3-205ENST00000465471 CDY2AQ9Y6F7 541 aa22.72■■□□□ 1.23
SKA3-205ENST00000465471 LOXHD1Q8IVV2 1947 aa22.72■■□□□ 1.23
SKA3-205ENST00000465471 VWA3AA6NCI4 1184 aa22.71■■□□□ 1.23
SKA3-205ENST00000465471 PP2D1A8MPX8 630 aa22.71■■□□□ 1.23
SKA3-205ENST00000465471 BRD1O95696 1058 aa22.71■■□□□ 1.23
SKA3-205ENST00000465471 FGBP02675 491 aa22.71■■□□□ 1.23
SKA3-205ENST00000465471 NASPP49321 788 aaPredicted RBP22.71■■□□□ 1.23
SKA3-205ENST00000465471 RARRES1P49788 294 aa22.71■■□□□ 1.23
SKA3-205ENST00000465471 ECM1Q16610 540 aa22.71■■□□□ 1.23
SKA3-205ENST00000465471 HABP4Q5JVS0 413 aaKnown RBP22.71■■□□□ 1.23
SKA3-205ENST00000465471 IER5Q5VY09 327 aa22.71■■□□□ 1.23
SKA3-205ENST00000465471 POTEGQ6S5H5 508 aa22.71■■□□□ 1.23
SKA3-205ENST00000465471 LRRC71Q8N4P6 559 aa22.71■■□□□ 1.23
SKA3-205ENST00000465471 ZDHHC9Q9Y397 364 aa22.71■■□□□ 1.23
SKA3-205ENST00000465471 TRPV2Q9Y5S1 764 aa22.71■■□□□ 1.23
SKA3-205ENST00000465471 RFC5P40937 340 aa22.7■■□□□ 1.22
SKA3-205ENST00000465471 TCTN1Q2MV58 587 aa22.7■■□□□ 1.22
SKA3-205ENST00000465471 LRIT3Q3SXY7 679 aa22.7■■□□□ 1.22
SKA3-205ENST00000465471 PLEKHG4Q58EX7 1191 aa22.7■■□□□ 1.22
SKA3-205ENST00000465471 FBXO47Q5MNV8 452 aa22.7■■□□□ 1.22
SKA3-205ENST00000465471 METTL13Q8N6R0 699 aa22.7■■□□□ 1.22
SKA3-205ENST00000465471 SNX29Q8TEQ0 813 aa22.7■■□□□ 1.22
SKA3-205ENST00000465471 AK8Q96MA6 479 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms