RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 MRPS6P82932 125 aaKnown RBP13.3□□□□□ -0.28
VPS52-213ENST00000461743 SMAD3P84022 425 aaKnown RBP13.3□□□□□ -0.28
VPS52-213ENST00000461743 MGAT3Q09327 533 aa13.3□□□□□ -0.28
VPS52-213ENST00000461743 IER5Q5VY09 327 aa13.3□□□□□ -0.28
VPS52-213ENST00000461743 HAUS3Q68CZ6 603 aa13.3□□□□□ -0.28
VPS52-213ENST00000461743 ZNF365Q70YC5 407 aa13.3□□□□□ -0.28
VPS52-213ENST00000461743 C16orf59Q7L2K0 433 aa13.3□□□□□ -0.28
VPS52-213ENST00000461743 EXOC8Q8IYI6 725 aa13.3□□□□□ -0.28
VPS52-213ENST00000461743 BANK1Q8NDB2 785 aa13.3□□□□□ -0.28
VPS52-213ENST00000461743 APBB2Q92870 758 aa13.3□□□□□ -0.28
VPS52-213ENST00000461743 VWCEQ96DN2 955 aa13.3□□□□□ -0.28
VPS52-213ENST00000461743 TMEM60Q9H2L4 133 aa13.3□□□□□ -0.28
VPS52-213ENST00000461743 ZSWIM4Q9H7M6 989 aa13.3□□□□□ -0.28
VPS52-213ENST00000461743 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.3□□□□□ -0.28
VPS52-213ENST00000461743 PCDH10Q9P2E7 1040 aa13.3□□□□□ -0.28
VPS52-213ENST00000461743 SEPT9Q9UHD8 586 aaPredicted RBP13.3□□□□□ -0.28
VPS52-213ENST00000461743 TMEM265A0A087WTH1 108 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 VPS37CA5D8V6 355 aaPredicted RBP13.29□□□□□ -0.28
VPS52-213ENST00000461743 GAS2O43903 313 aaKnown RBP13.29□□□□□ -0.28
VPS52-213ENST00000461743 NBNO60934 754 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 CTSHP09668 335 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 ACRP10323 421 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 SYT1P21579 422 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 KLRC1P26715 233 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 TMOD1P28289 359 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 TXKP42681 527 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 TOB1P50616 345 aaPredicted RBP13.29□□□□□ -0.28
VPS52-213ENST00000461743 FXR1P51114 621 aaKnown RBP eCLIP13.29□□□□□ -0.28
VPS52-213ENST00000461743 TBC1D8BQ0IIM8 1120 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 MBTPS1Q14703 1052 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 TARBP2Q15633 366 aaKnown RBP13.29□□□□□ -0.28
VPS52-213ENST00000461743 ZNF174Q15697 407 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 DEFB128Q7Z7B8 93 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 LINC01465Q8N7H1 131 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 USP38Q8NB14 1042 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 TRAPPC12Q8WVT3 735 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 DNAJB3Q8WWF6 145 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 MAP7D2Q96T17 732 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 SLC9A7Q96T83 725 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 EIF2AK1Q9BQI3 630 aaKnown RBP13.29□□□□□ -0.28
VPS52-213ENST00000461743 FTOQ9C0B1 505 aaKnown RBP eCLIP13.29□□□□□ -0.28
VPS52-213ENST00000461743 TUFT1Q9NNX1 390 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 PCDHB6Q9Y5E3 794 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 TRPV2Q9Y5S1 764 aa13.29□□□□□ -0.28
VPS52-213ENST00000461743 ABHD14A-ACY1A0A1B0GW23 586 aa13.28□□□□□ -0.28
VPS52-213ENST00000461743 POTEMA6NI47 508 aa13.28□□□□□ -0.28
VPS52-213ENST00000461743 STBD1O95210 358 aa13.28□□□□□ -0.28
VPS52-213ENST00000461743 HSP90AA1P07900 732 aaKnown RBP13.28□□□□□ -0.28
VPS52-213ENST00000461743 ATP2C1P98194 919 aaPredicted RBP13.28□□□□□ -0.28
VPS52-213ENST00000461743 CDC42EP1Q00587 391 aa13.28□□□□□ -0.28
VPS52-213ENST00000461743 PDIA5Q14554 519 aa13.28□□□□□ -0.28
VPS52-213ENST00000461743 GPNMBQ14956 572 aa13.28□□□□□ -0.28
VPS52-213ENST00000461743 PLEKHG4Q58EX7 1191 aa13.28□□□□□ -0.28
VPS52-213ENST00000461743 ARL6IP4Q66PJ3 421 aaKnown RBP13.28□□□□□ -0.28
VPS52-213ENST00000461743 TSHZ1Q6ZSZ6 1077 aa13.28□□□□□ -0.28
VPS52-213ENST00000461743 OTUD6AQ7L8S5 288 aa13.28□□□□□ -0.28
VPS52-213ENST00000461743 C4orf32Q8N8J7 132 aa13.28□□□□□ -0.28
VPS52-213ENST00000461743 SEPT8Q92599 483 aa13.28□□□□□ -0.28
VPS52-213ENST00000461743 HSD17B14Q9BPX1 270 aa13.28□□□□□ -0.28
VPS52-213ENST00000461743 POLR3CQ9BUI4 534 aaPredicted RBP13.28□□□□□ -0.28
VPS52-213ENST00000461743 FAM49AQ9H0Q0 323 aaPredicted RBP13.28□□□□□ -0.28
VPS52-213ENST00000461743 CHD9Q3L8U1 2897 aa13.28□□□□□ -0.28
VPS52-213ENST00000461743 TCHHQ07283 1943 aa13.27□□□□□ -0.28
VPS52-213ENST00000461743 TRANK1O15050 2925 aa13.27□□□□□ -0.28
VPS52-213ENST00000461743 MYO9BQ13459 2157 aa13.27□□□□□ -0.28
VPS52-213ENST00000461743 IGKV6-21A0A0C4DH24 114 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 STX6O43752 255 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 CHRNA1P02708 482 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 YWHABP31946 246 aaKnown RBP13.27□□□□□ -0.29
VPS52-213ENST00000461743 RFC5P40937 340 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 KCNJ6P48051 423 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 PTGDRQ13258 359 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 NBR1Q14596 966 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 MTERF2Q49AM1 385 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 FBXO47Q5MNV8 452 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 ODR4Q5SWX8 454 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 ANO5Q75V66 913 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 OTOP2Q7RTS6 562 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 KIAA0319LQ8IZA0 1049 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 IGSF22Q8N9C0 903 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 PHOSPHO2Q8TCD6 241 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 DYDC2Q96IM9 177 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 CEP89Q96ST8 783 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 IFIH1Q9BYX4 1025 aaKnown RBP13.27□□□□□ -0.29
VPS52-213ENST00000461743 ZSCAN16Q9H4T2 348 aaPredicted RBP13.27□□□□□ -0.29
VPS52-213ENST00000461743 CYP26B1Q9NR63 512 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 ANKEF1Q9NU02 776 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 CDY2AQ9Y6F7 541 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 SLC4A7Q9Y6M7 1214 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 KIAA1671Q9BY89 1806 aa13.27□□□□□ -0.29
VPS52-213ENST00000461743 FNDC1Q4ZHG4 1894 aaPredicted RBP13.27□□□□□ -0.29
VPS52-213ENST00000461743 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.26□□□□□ -0.29
VPS52-213ENST00000461743 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.26□□□□□ -0.29
VPS52-213ENST00000461743 ZBBXA8MT70 800 aa13.26□□□□□ -0.29
VPS52-213ENST00000461743 SLC26A4O43511 780 aa13.26□□□□□ -0.29
VPS52-213ENST00000461743 MAFO75444 373 aaPredicted RBP13.26□□□□□ -0.29
VPS52-213ENST00000461743 SLITRK3O94933 977 aa13.26□□□□□ -0.29
VPS52-213ENST00000461743 XRCC6P12956 609 aaKnown RBP eCLIP13.26□□□□□ -0.29
VPS52-213ENST00000461743 RPA1P27694 616 aa13.26□□□□□ -0.29
VPS52-213ENST00000461743 TECP42680 631 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms