RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 TAP1Q03518 808 aa25.9■■□□□ 1.74
PTPN4-208ENST00000460289 EARS2Q5JPH6 523 aaKnown RBP25.9■■□□□ 1.74
PTPN4-208ENST00000460289 DIS3L2Q8IYB7 885 aaKnown RBP25.9■■□□□ 1.74
PTPN4-208ENST00000460289 KIAA0319LQ8IZA0 1049 aa25.9■■□□□ 1.74
PTPN4-208ENST00000460289 TOP1MTQ969P6 601 aa25.9■■□□□ 1.74
PTPN4-208ENST00000460289 MYH9P35579 1960 aaKnown RBP25.89■■□□□ 1.74
PTPN4-208ENST00000460289 ZNF862O60290 1169 aa25.89■■□□□ 1.74
PTPN4-208ENST00000460289 C22orf31O95567 290 aa25.89■■□□□ 1.74
PTPN4-208ENST00000460289 HMGN5P82970 282 aaKnown RBP25.89■■□□□ 1.74
PTPN4-208ENST00000460289 PRKCEQ02156 737 aa25.89■■□□□ 1.74
PTPN4-208ENST00000460289 SAFBQ15424 915 aaKnown RBP eCLIP25.89■■□□□ 1.74
PTPN4-208ENST00000460289 FAM117BQ6P1L5 589 aa25.89■■□□□ 1.74
PTPN4-208ENST00000460289 FAM43BQ6ZT52 329 aaPredicted RBP25.89■■□□□ 1.74
PTPN4-208ENST00000460289 CDH23Q9H251 3354 aa25.89■■□□□ 1.73
PTPN4-208ENST00000460289 LOC101059915A0A1B0GWI6 518 aaPredicted RBP25.88■■□□□ 1.73
PTPN4-208ENST00000460289 ST18O60284 1047 aa25.88■■□□□ 1.73
PTPN4-208ENST00000460289 BAG4O95429 457 aaKnown RBP25.88■■□□□ 1.73
PTPN4-208ENST00000460289 PPP2R5CQ13362 524 aa25.88■■□□□ 1.73
PTPN4-208ENST00000460289 SLFN12Q8IYM2 578 aa25.88■■□□□ 1.73
PTPN4-208ENST00000460289 METTL13Q8N6R0 699 aa25.88■■□□□ 1.73
PTPN4-208ENST00000460289 RBAK-RBAKDNI3L0D1 243 aa25.87■■□□□ 1.73
PTPN4-208ENST00000460289 TMOD1P28289 359 aa25.87■■□□□ 1.73
PTPN4-208ENST00000460289 FOSBP53539 338 aa25.87■■□□□ 1.73
PTPN4-208ENST00000460289 UGCGQ16739 394 aa25.87■■□□□ 1.73
PTPN4-208ENST00000460289 XKR3Q5GH77 459 aa25.87■■□□□ 1.73
PTPN4-208ENST00000460289 C8orf76Q96K31 380 aa25.87■■□□□ 1.73
PTPN4-208ENST00000460289 FTHL17Q9BXU8 183 aa25.87■■□□□ 1.73
PTPN4-208ENST00000460289 AGO3Q9H9G7 860 aaKnown RBP25.87■■□□□ 1.73
PTPN4-208ENST00000460289 LCHNA4D1U4 455 aa25.86■■□□□ 1.73
PTPN4-208ENST00000460289 FAM205CA6NFA0 338 aa25.86■■□□□ 1.73
PTPN4-208ENST00000460289 ENPP3O14638 875 aa25.86■■□□□ 1.73
PTPN4-208ENST00000460289 UPP2O95045 317 aa25.86■■□□□ 1.73
PTPN4-208ENST00000460289 IGFBP4P22692 258 aa25.86■■□□□ 1.73
PTPN4-208ENST00000460289 CD52P31358 61 aa25.86■■□□□ 1.73
PTPN4-208ENST00000460289 HTRA4P83105 476 aaPredicted RBP25.86■■□□□ 1.73
PTPN4-208ENST00000460289 ZNF710Q8N1W2 664 aa25.86■■□□□ 1.73
PTPN4-208ENST00000460289 FAM184AQ8NB25 1140 aa25.86■■□□□ 1.73
PTPN4-208ENST00000460289 HAS1Q92839 578 aa25.86■■□□□ 1.73
PTPN4-208ENST00000460289 NIFKQ9BYG3 293 aaKnown RBP25.86■■□□□ 1.73
PTPN4-208ENST00000460289 CERS4Q9HA82 394 aa25.86■■□□□ 1.73
PTPN4-208ENST00000460289 VAV3Q9UKW4 847 aa25.86■■□□□ 1.73
PTPN4-208ENST00000460289 MICAL3Q7RTP6 2002 aa25.86■■□□□ 1.73
PTPN4-208ENST00000460289 MYO9BQ13459 2157 aa25.86■■□□□ 1.73
PTPN4-208ENST00000460289 DKC1O60832 514 aaKnown RBP eCLIP25.85■■□□□ 1.734e-7■■■■■ 56.9
PTPN4-208ENST00000460289 PSMC5P62195 406 aa25.85■■□□□ 1.73
PTPN4-208ENST00000460289 PAK2Q13177 524 aa25.85■■□□□ 1.73
PTPN4-208ENST00000460289 ADGRE1Q14246 886 aa25.85■■□□□ 1.73
PTPN4-208ENST00000460289 ODR4Q5SWX8 454 aa25.85■■□□□ 1.73
PTPN4-208ENST00000460289 EFCAB12Q6NXP0 572 aa25.85■■□□□ 1.73
PTPN4-208ENST00000460289 POTEDQ86YR6 584 aa25.85■■□□□ 1.73
PTPN4-208ENST00000460289 ARNTL2Q8WYA1 636 aa25.85■■□□□ 1.73
PTPN4-208ENST00000460289 PADI3Q9ULW8 664 aa25.85■■□□□ 1.73
PTPN4-208ENST00000460289 GINS2Q9Y248 185 aa25.85■■□□□ 1.73
PTPN4-208ENST00000460289 PTPRSQ13332 1948 aa25.84■■□□□ 1.73
PTPN4-208ENST00000460289 ARHGEF15O94989 841 aa25.84■■□□□ 1.73
PTPN4-208ENST00000460289 MAP7D2Q96T17 732 aa25.84■■□□□ 1.73
PTPN4-208ENST00000460289 YME1L1Q96TA2 773 aa25.84■■□□□ 1.73
PTPN4-208ENST00000460289 LINC01553A4QN01 128 aa25.83■■□□□ 1.73
PTPN4-208ENST00000460289 EML1O00423 815 aa25.83■■□□□ 1.73
PTPN4-208ENST00000460289 QARSP47897 775 aaKnown RBP25.83■■□□□ 1.73
PTPN4-208ENST00000460289 CRYBB1P53674 252 aaPredicted RBP25.83■■□□□ 1.73
PTPN4-208ENST00000460289 GUCY1B3Q02153 619 aa25.83■■□□□ 1.73
PTPN4-208ENST00000460289 TBC1D8BQ0IIM8 1120 aa25.83■■□□□ 1.73
PTPN4-208ENST00000460289 BANK1Q8NDB2 785 aa25.83■■□□□ 1.73
PTPN4-208ENST00000460289 FBXO18Q8NFZ0 1043 aa25.83■■□□□ 1.73
PTPN4-208ENST00000460289 TGS1Q96RS0 853 aaKnown RBP25.83■■□□□ 1.73
PTPN4-208ENST00000460289 SEPT9Q9UHD8 586 aaPredicted RBP25.83■■□□□ 1.73
PTPN4-208ENST00000460289 DDX11L8A8MPP1 907 aa25.82■■□□□ 1.72
PTPN4-208ENST00000460289 RPS6KA5O75582 802 aa25.82■■□□□ 1.72
PTPN4-208ENST00000460289 P4HBP07237 508 aaKnown RBP25.82■■□□□ 1.72
PTPN4-208ENST00000460289 EPHA7Q15375 998 aa25.82■■□□□ 1.72
PTPN4-208ENST00000460289 TARBP2Q15633 366 aaKnown RBP25.82■■□□□ 1.72
PTPN4-208ENST00000460289 SP7Q8TDD2 431 aaPredicted RBP25.82■■□□□ 1.72
PTPN4-208ENST00000460289 FOXP1Q9H334 677 aaPredicted RBP25.82■■□□□ 1.72
PTPN4-208ENST00000460289 SUGCTQ9HAC7 445 aa25.82■■□□□ 1.72
PTPN4-208ENST00000460289 AKT3Q9Y243 479 aa25.82■■□□□ 1.72
PTPN4-208ENST00000460289 CHD7Q9P2D1 2997 aa25.81■■□□□ 1.72
PTPN4-208ENST00000460289 GPR182O15218 404 aa25.81■■□□□ 1.72
PTPN4-208ENST00000460289 GTPBP6O43824 516 aaPredicted RBP25.81■■□□□ 1.72
PTPN4-208ENST00000460289 STBD1O95210 358 aa25.81■■□□□ 1.72
PTPN4-208ENST00000460289 VTNP04004 478 aa25.81■■□□□ 1.72
PTPN4-208ENST00000460289 POU3F3P20264 500 aaPredicted RBP25.81■■□□□ 1.72
PTPN4-208ENST00000460289 CLCN3P51790 818 aa25.81■■□□□ 1.72
PTPN4-208ENST00000460289 ERVK-21P61565 698 aa25.81■■□□□ 1.72
PTPN4-208ENST00000460289 NFX1Q12986 1120 aaKnown RBP25.81■■□□□ 1.72
PTPN4-208ENST00000460289 CALCRLQ16602 461 aa25.81■■□□□ 1.72
PTPN4-208ENST00000460289 KIZQ2M2Z5 673 aa25.81■■□□□ 1.72
PTPN4-208ENST00000460289 LRRC71Q8N4P6 559 aa25.81■■□□□ 1.72
PTPN4-208ENST00000460289 LINC01465Q8N7H1 131 aa25.81■■□□□ 1.72
PTPN4-208ENST00000460289 CDHR5Q9HBB8 845 aa25.81■■□□□ 1.72
PTPN4-208ENST00000460289 PCDHA12Q9UN75 941 aa25.81■■□□□ 1.72
PTPN4-208ENST00000460289 SIP14410 1827 aa25.81■■□□□ 1.72
PTPN4-208ENST00000460289 RFXAPO00287 272 aa25.8■■□□□ 1.72
PTPN4-208ENST00000460289 NEMFO60524 1076 aa25.8■■□□□ 1.72
PTPN4-208ENST00000460289 GPR32O75388 356 aa25.8■■□□□ 1.72
PTPN4-208ENST00000460289 CDC42EP1Q00587 391 aa25.8■■□□□ 1.72
PTPN4-208ENST00000460289 MTERF2Q49AM1 385 aa25.8■■□□□ 1.72
PTPN4-208ENST00000460289 PHF6Q8IWS0 365 aaKnown RBP eCLIP25.8■■□□□ 1.72
PTPN4-208ENST00000460289 TBC1D32Q96NH3 1257 aa25.8■■□□□ 1.72
PTPN4-208ENST00000460289 TSPYL2Q9H2G4 693 aaPredicted RBP25.8■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms