RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SCDO00767 359 aa5.67□□□□□ -1.5
USP40-209ENST00000452724 B4GALT4O60513 344 aa5.67□□□□□ -1.5
USP40-209ENST00000452724 DNAJC6O75061 913 aa5.67□□□□□ -1.5
USP40-209ENST00000452724 HIP1RO75146 1068 aa5.67□□□□□ -1.5
USP40-209ENST00000452724 KRT37O76014 449 aa5.67□□□□□ -1.5
USP40-209ENST00000452724 VIL1P09327 827 aaKnown RBP5.67□□□□□ -1.5
USP40-209ENST00000452724 SOX5P35711 763 aa5.67□□□□□ -1.5
USP40-209ENST00000452724 IRF9Q00978 393 aa5.67□□□□□ -1.5
USP40-209ENST00000452724 SEPT7Q16181 437 aaKnown RBP5.67□□□□□ -1.5
USP40-209ENST00000452724 CD276Q5ZPR3 534 aa5.67□□□□□ -1.5
USP40-209ENST00000452724 PROSER1Q86XN7 944 aa5.67□□□□□ -1.5
USP40-209ENST00000452724 IGDCC4Q8TDY8 1250 aa5.67□□□□□ -1.5
USP40-209ENST00000452724 SSBP3Q9BWW4 388 aaPredicted RBP5.67□□□□□ -1.5
USP40-209ENST00000452724 SPC25Q9HBM1 224 aa5.67□□□□□ -1.5
USP40-209ENST00000452724 PPP4R1LQ9P1A2 415 aa5.67□□□□□ -1.5
USP40-209ENST00000452724 ADAM29Q9UKF5 820 aa5.67□□□□□ -1.5
USP40-209ENST00000452724 WASF3Q9UPY6 502 aa5.67□□□□□ -1.5
USP40-209ENST00000452724 ZKSCAN5Q9Y2L8 839 aa5.67□□□□□ -1.5
USP40-209ENST00000452724 ACOT7O00154 380 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 GAS7O60861 476 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 F2P00734 622 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 ZBTB48P10074 688 aaPredicted RBP5.66□□□□□ -1.5
USP40-209ENST00000452724 GLRBP48167 497 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 PFKPQ01813 784 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 SEC23AQ15436 765 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 ZNF568Q3ZCX4 644 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 DPP8Q6V1X1 898 aaPredicted RBP5.66□□□□□ -1.5
USP40-209ENST00000452724 Q6ZUG5 572 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 KRT26Q7Z3Y9 468 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 FILIP1Q7Z7B0 1213 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 REXO1L1PQ8IX06 675 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 UBR7Q8N806 425 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 NUDT10Q8NFP7 164 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 NUDT11Q96G61 164 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 TMPRSS5Q9H3S3 457 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.66□□□□□ -1.5
USP40-209ENST00000452724 KCNH7Q9NS40 1196 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 ST6GALNAC2Q9UJ37 374 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 B3GALT1Q9Y5Z6 326 aa5.66□□□□□ -1.5
USP40-209ENST00000452724 PRAMEF25A6NGN4 478 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 ZNF839A8K0R7 811 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 ZNF891A8MT65 544 aaPredicted RBP5.65□□□□□ -1.5
USP40-209ENST00000452724 H0Y858 1186 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 H7C1D1 291 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 KLHL18O94889 574 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 KNG1P01042 644 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 C4BPAP04003 597 aaKnown RBP5.65□□□□□ -1.5
USP40-209ENST00000452724 COL6A1P12109 1028 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 SCNN1BP51168 640 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 DSG1Q02413 1049 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 CT47A1Q5JQC4 288 aaPredicted RBP5.65□□□□□ -1.5
USP40-209ENST00000452724 PHF19Q5T6S3 580 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 NXPE1Q8N323 547 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 STPG3Q8N7X2 389 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 OR2W6PQ8NHA6 318 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 DLG3Q92796 817 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 DEF6Q9H4E7 631 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 KCND1Q9NSA2 647 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 IFT57Q9NWB7 429 aa5.65□□□□□ -1.5
USP40-209ENST00000452724 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.64□□□□□ -1.51
USP40-209ENST00000452724 ATP2A2P16615 1042 aaKnown RBP5.64□□□□□ -1.51
USP40-209ENST00000452724 CNGA1P29973 690 aa5.64□□□□□ -1.51
USP40-209ENST00000452724 SART3Q15020 963 aaKnown RBP5.64□□□□□ -1.51
USP40-209ENST00000452724 DHCR24Q15392 516 aa5.64□□□□□ -1.51
USP40-209ENST00000452724 DDX46Q7L014 1031 aaKnown RBP5.64□□□□□ -1.51
USP40-209ENST00000452724 SMC1BQ8NDV3 1235 aa5.64□□□□□ -1.51
USP40-209ENST00000452724 AJUBAQ96IF1 538 aa5.64□□□□□ -1.51
USP40-209ENST00000452724 KRTAP3-1Q9BYR8 98 aa5.64□□□□□ -1.51
USP40-209ENST00000452724 SEMA4AQ9H3S1 761 aa5.64□□□□□ -1.51
USP40-209ENST00000452724 SEC61A2Q9H9S3 476 aa5.64□□□□□ -1.51
USP40-209ENST00000452724 ARHGAP28Q9P2N2 729 aa5.64□□□□□ -1.51
USP40-209ENST00000452724 TSC22D4Q9Y3Q8 395 aa5.64□□□□□ -1.51
USP40-209ENST00000452724 TCAF1Q9Y4C2 921 aa5.64□□□□□ -1.51
USP40-209ENST00000452724 ANKRD62A6NC57 917 aa5.63□□□□□ -1.51
USP40-209ENST00000452724 CUTAO60888 179 aa5.63□□□□□ -1.51
USP40-209ENST00000452724 TNFRSF1AP19438 455 aa5.63□□□□□ -1.51
USP40-209ENST00000452724 KIF11P52732 1056 aa5.63□□□□□ -1.51
USP40-209ENST00000452724 HERVK_113P62684 666 aa5.63□□□□□ -1.51
USP40-209ENST00000452724 DBPQ10586 325 aaPredicted RBP5.63□□□□□ -1.51
USP40-209ENST00000452724 TMEM132BQ14DG7 1078 aa5.63□□□□□ -1.51
USP40-209ENST00000452724 ZNF174Q15697 407 aa5.63□□□□□ -1.51
USP40-209ENST00000452724 HS1BP3Q53T59 392 aa5.63□□□□□ -1.51
USP40-209ENST00000452724 CREB3L3Q68CJ9 461 aa5.63□□□□□ -1.51
USP40-209ENST00000452724 KIAA1958Q8N8K9 716 aa5.63□□□□□ -1.51
USP40-209ENST00000452724 TACO1Q9BSH4 297 aaKnown RBP5.63□□□□□ -1.51
USP40-209ENST00000452724 KLC2Q9H0B6 622 aa5.63□□□□□ -1.51
USP40-209ENST00000452724 PCIF1Q9H4Z3 704 aa5.63□□□□□ -1.51
USP40-209ENST00000452724 OXSMQ9NWU1 459 aa5.63□□□□□ -1.51
USP40-209ENST00000452724 THG1LQ9NWX6 298 aaKnown RBP5.63□□□□□ -1.51
USP40-209ENST00000452724 SLC4A7Q9Y6M7 1214 aa5.63□□□□□ -1.51
USP40-209ENST00000452724 DVL2O14641 736 aa5.62□□□□□ -1.51
USP40-209ENST00000452724 MATN3O15232 486 aa5.62□□□□□ -1.51
USP40-209ENST00000452724 FOXP2O15409 715 aa5.62□□□□□ -1.51
USP40-209ENST00000452724 GPR42O15529 346 aa5.62□□□□□ -1.51
USP40-209ENST00000452724 MMEP08473 750 aa5.62□□□□□ -1.51
USP40-209ENST00000452724 SDHAP31040 664 aa5.62□□□□□ -1.51
USP40-209ENST00000452724 SELENOPP49908 381 aa5.62□□□□□ -1.51
USP40-209ENST00000452724 IL2P60568 153 aa5.62□□□□□ -1.51
USP40-209ENST00000452724 ZXDAP98168 799 aa5.62□□□□□ -1.51
USP40-209ENST00000452724 STRN3Q13033 797 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms