RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 SMAP1Q8IYB5 467 aaPredicted RBP16.45■□□□□ 0.22
USP39-206ENST00000448971 LMBR1Q8WVP7 490 aa16.45■□□□□ 0.22
USP39-206ENST00000448971 PCYT2Q99447 389 aa16.45■□□□□ 0.22
USP39-206ENST00000448971 RNPEPQ9H4A4 650 aa16.45■□□□□ 0.22
USP39-206ENST00000448971 SETD4Q9NVD3 440 aa16.45■□□□□ 0.22
USP39-206ENST00000448971 COL4A4P53420 1690 aaPredicted RBP16.44■□□□□ 0.22
USP39-206ENST00000448971 WDR64B1ANS9 1081 aa16.44■□□□□ 0.22
USP39-206ENST00000448971 BTBD18B2RXH4 712 aa16.44■□□□□ 0.22
USP39-206ENST00000448971 SLC37A4O43826 429 aa16.44■□□□□ 0.22
USP39-206ENST00000448971 EDIL3O43854 480 aa16.44■□□□□ 0.22
USP39-206ENST00000448971 MARCH6O60337 910 aa16.44■□□□□ 0.22
USP39-206ENST00000448971 PSAPP07602 524 aa16.44■□□□□ 0.22
USP39-206ENST00000448971 IGBP1P78318 339 aa16.44■□□□□ 0.22
USP39-206ENST00000448971 EARS2Q5JPH6 523 aaKnown RBP16.44■□□□□ 0.22
USP39-206ENST00000448971 TMEM31Q5JXX7 168 aa16.44■□□□□ 0.22
USP39-206ENST00000448971 ZNF618Q5T7W0 954 aa16.44■□□□□ 0.22
USP39-206ENST00000448971 CCDC60Q8IWA6 550 aaPredicted RBP16.44■□□□□ 0.22
USP39-206ENST00000448971 TNPO1Q92973 898 aaKnown RBP16.44■□□□□ 0.22
USP39-206ENST00000448971 TNFRSF25Q93038 417 aa16.44■□□□□ 0.22
USP39-206ENST00000448971 GJA10Q969M2 543 aa16.44■□□□□ 0.22
USP39-206ENST00000448971 TGS1Q96RS0 853 aaKnown RBP16.44■□□□□ 0.22
USP39-206ENST00000448971 RIT2Q99578 217 aa16.44■□□□□ 0.22
USP39-206ENST00000448971 ZNF302Q9NR11 478 aa16.44■□□□□ 0.22
USP39-206ENST00000448971 NRCAMQ92823 1304 aa16.44■□□□□ 0.22
USP39-206ENST00000448971 CYP3A7-CYP3A51PA0A087WV96 503 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 PI4K2BG5E9Z4 385 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 TREHO43280 583 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 CYP3A7P24462 503 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 HOXC8P31273 242 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 SLC26A2P50443 739 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 IKBKEQ14164 716 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 GRIK4Q16099 956 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 PDXDC2PQ6P474 469 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 ABHD15Q6UXT9 468 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 PLPPR4Q7Z2D5 763 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 SERINC5Q86VE9 423 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 CKAP2LQ8IYA6 745 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 SLC5A5Q92911 643 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 MBOAT7Q96N66 472 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 TUBE1Q9UJT0 475 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 MTUS1Q9ULD2 1270 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 PCDHA10Q9Y5I2 948 aa16.43■□□□□ 0.22
USP39-206ENST00000448971 EFCAB14O75071 495 aa16.42■□□□□ 0.22
USP39-206ENST00000448971 ATG7O95352 703 aa16.42■□□□□ 0.22
USP39-206ENST00000448971 CTSHP09668 335 aa16.42■□□□□ 0.22
USP39-206ENST00000448971 THPOP40225 353 aa16.42■□□□□ 0.22
USP39-206ENST00000448971 JAK3P52333 1124 aa16.42■□□□□ 0.22
USP39-206ENST00000448971 PLCB4Q15147 1175 aa16.42■□□□□ 0.22
USP39-206ENST00000448971 PPP4R3AQ6IN85 833 aa16.42■□□□□ 0.22
USP39-206ENST00000448971 SWSAP1Q6NVH7 229 aa16.42■□□□□ 0.22
USP39-206ENST00000448971 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.42■□□□□ 0.22
USP39-206ENST00000448971 MIER3Q7Z3K6 550 aa16.42■□□□□ 0.22
USP39-206ENST00000448971 ETNPPLQ8TBG4 499 aa16.42■□□□□ 0.22
USP39-206ENST00000448971 UNC45AQ9H3U1 944 aa16.42■□□□□ 0.22
USP39-206ENST00000448971 UBE2ZQ9H832 354 aaPredicted RBP16.42■□□□□ 0.22
USP39-206ENST00000448971 DISC1Q9NRI5 854 aa16.42■□□□□ 0.22
USP39-206ENST00000448971 SIP14410 1827 aa16.41■□□□□ 0.22
USP39-206ENST00000448971 IGKV6D-21A0A0A0MT36 114 aa16.41■□□□□ 0.22
USP39-206ENST00000448971 POTEB3A0JP26 581 aa16.41■□□□□ 0.22
USP39-206ENST00000448971 PSMD10O75832 226 aa16.41■□□□□ 0.22
USP39-206ENST00000448971 SFNP31947 248 aa16.41■□□□□ 0.22
USP39-206ENST00000448971 LEXMQ3ZCV2 418 aa16.41■□□□□ 0.22
USP39-206ENST00000448971 POTEBQ6S5H4 581 aa16.41■□□□□ 0.22
USP39-206ENST00000448971 TRMT1LQ7Z2T5 733 aaKnown RBP16.41■□□□□ 0.22
USP39-206ENST00000448971 FBXO18Q8NFZ0 1043 aa16.41■□□□□ 0.22
USP39-206ENST00000448971 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.41■□□□□ 0.22
USP39-206ENST00000448971 GABBR1Q9UBS5 961 aa16.41■□□□□ 0.22
USP39-206ENST00000448971 CIZ1Q9ULV3 898 aaPredicted RBP16.41■□□□□ 0.22
USP39-206ENST00000448971 SMC3Q9UQE7 1217 aa16.41■□□□□ 0.22
USP39-206ENST00000448971 INSL6Q9Y581 213 aa16.41■□□□□ 0.22
USP39-206ENST00000448971 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.41■□□□□ 0.22
USP39-206ENST00000448971 MICAL3Q7RTP6 2002 aa16.41■□□□□ 0.22
USP39-206ENST00000448971 IGSF9BQ9UPX0 1349 aa16.41■□□□□ 0.22
USP39-206ENST00000448971 NEMFO60524 1076 aa16.4■□□□□ 0.22
USP39-206ENST00000448971 INSRRP14616 1297 aa16.4■□□□□ 0.22
USP39-206ENST00000448971 ATP2B1P20020 1258 aa16.4■□□□□ 0.22
USP39-206ENST00000448971 GJB2P29033 226 aa16.4■□□□□ 0.22
USP39-206ENST00000448971 HTRA4P83105 476 aaPredicted RBP16.4■□□□□ 0.22
USP39-206ENST00000448971 FAM117BQ6P1L5 589 aa16.4■□□□□ 0.22
USP39-206ENST00000448971 TAF2Q6P1X5 1199 aa16.4■□□□□ 0.22
USP39-206ENST00000448971 FAM178BQ8IXR5 827 aa16.4■□□□□ 0.22
USP39-206ENST00000448971 DBF4BQ8NFT6 615 aa16.4■□□□□ 0.22
USP39-206ENST00000448971 ATP8B4Q8TF62 1192 aa16.4■□□□□ 0.22
USP39-206ENST00000448971 C17orf80Q9BSJ5 609 aa16.4■□□□□ 0.22
USP39-206ENST00000448971 FOXP1Q9H334 677 aaPredicted RBP16.4■□□□□ 0.22
USP39-206ENST00000448971 KCNMB3Q9NPA1 279 aa16.4■□□□□ 0.22
USP39-206ENST00000448971 HCN4Q9Y3Q4 1203 aa16.4■□□□□ 0.22
USP39-206ENST00000448971 RRN3P2A6NIE6 340 aa16.39■□□□□ 0.21
USP39-206ENST00000448971 TBX3O15119 743 aa16.39■□□□□ 0.21
USP39-206ENST00000448971 HBP1O60381 514 aa16.39■□□□□ 0.21
USP39-206ENST00000448971 CAND2O75155 1236 aa16.39■□□□□ 0.21
USP39-206ENST00000448971 RDM1Q8NG50 284 aa16.39■□□□□ 0.21
USP39-206ENST00000448971 SP7Q8TDD2 431 aaPredicted RBP16.39■□□□□ 0.21
USP39-206ENST00000448971 TRAPPC12Q8WVT3 735 aa16.39■□□□□ 0.21
USP39-206ENST00000448971 FAM167AQ96KS9 214 aa16.39■□□□□ 0.21
USP39-206ENST00000448971 FAM20AQ96MK3 541 aa16.39■□□□□ 0.21
USP39-206ENST00000448971 TRIOO75962 3097 aa16.39■□□□□ 0.21
USP39-206ENST00000448971 FAM86C2PA6NEL3 165 aa16.38■□□□□ 0.21
USP39-206ENST00000448971 RSPH10B2B2RC85 870 aa16.38■□□□□ 0.21
USP39-206ENST00000448971 H3BQV1 296 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms