RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 FAM49AQ9H0Q0 323 aaPredicted RBP8.03□□□□□ -1.12
VPS41-208ENST00000448833 ZNF302Q9NR11 478 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 SH3GLB2Q9NR46 395 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 AAASQ9NRG9 546 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 LRFN2Q9ULH4 789 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 ARIH1Q9Y4X5 557 aaPredicted RBP8.03□□□□□ -1.12
VPS41-208ENST00000448833 PCDHA10Q9Y5I2 948 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 IGSF9BQ9UPX0 1349 aa8.03□□□□□ -1.12
VPS41-208ENST00000448833 NID2Q14112 1375 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 CHRM1P11229 460 aaPredicted RBP8.02□□□□□ -1.13
VPS41-208ENST00000448833 ALADP13716 330 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 KCNA5P22460 613 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 RPS6KB1P23443 525 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 CDC27P30260 824 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 EVCP57679 992 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 APOBRQ0VD83 1088 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 CSPP1Q1MSJ5 1256 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 JAKMIP3Q5VZ66 844 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 GALNT17Q6IS24 598 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 SWSAP1Q6NVH7 229 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 HS6ST3Q8IZP7 471 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 CYP2W1Q8TAV3 490 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 ZNF689Q96CS4 500 aaPredicted RBP8.02□□□□□ -1.13
VPS41-208ENST00000448833 TCEANC2Q96MN5 208 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 PCYT2Q99447 389 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 AGXT2Q9BYV1 514 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 C1orf112Q9NSG2 853 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 NRBP2Q9NSY0 501 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 FAM217BQ9NTX9 383 aaPredicted RBP8.02□□□□□ -1.13
VPS41-208ENST00000448833 PRKAG3Q9UGI9 489 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 PADI3Q9ULW8 664 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 SAMM50Q9Y512 469 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 PCDHB7Q9Y5E2 793 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 BRWD1Q9NSI6 2320 aa8.02□□□□□ -1.13
VPS41-208ENST00000448833 FNDC1Q4ZHG4 1894 aaPredicted RBP8.02□□□□□ -1.13
VPS41-208ENST00000448833 IGLV3-22A0A075B6J6 115 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 DENND3A2RUS2 1198 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 GRXCR2A6NFK2 248 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 WDR64B1ANS9 1081 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 CPLX1O14810 134 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 RPS6KA5O75582 802 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 IFNAR1P17181 557 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 COL9A1P20849 921 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 CD52P31358 61 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 SFNP31947 248 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 CIITAP33076 1130 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 CRYBB1P53674 252 aaPredicted RBP8.01□□□□□ -1.13
VPS41-208ENST00000448833 NFX1Q12986 1120 aaKnown RBP8.01□□□□□ -1.13
VPS41-208ENST00000448833 ITGB3BPQ13352 177 aaPredicted RBP8.01□□□□□ -1.13
VPS41-208ENST00000448833 PTCRAQ6ISU1 281 aaPredicted RBP8.01□□□□□ -1.13
VPS41-208ENST00000448833 PDE12Q6L8Q7 609 aaKnown RBP8.01□□□□□ -1.13
VPS41-208ENST00000448833 TYW1BQ6NUM6 668 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 SLC24A5Q71RS6 500 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 RUFY3Q7L099 469 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 SPRED2Q7Z698 418 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 RDM1Q8NG50 284 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 NEK9Q8TD19 979 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 CRYGNQ8WXF5 182 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 RSPH1Q8WYR4 309 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 ZNF274Q96GC6 653 aaPredicted RBP8.01□□□□□ -1.13
VPS41-208ENST00000448833 POP1Q99575 1024 aaKnown RBP8.01□□□□□ -1.13
VPS41-208ENST00000448833 RIT2Q99578 217 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 UPF3BQ9BZI7 483 aaKnown RBP8.01□□□□□ -1.13
VPS41-208ENST00000448833 TMEM260Q9NX78 707 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 TELO2Q9Y4R8 837 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 PCDHB12Q9Y5F1 795 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 MAFBQ9Y5Q3 323 aaPredicted RBP8.01□□□□□ -1.13
VPS41-208ENST00000448833 SNX14Q9Y5W7 946 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 CYP46A1Q9Y6A2 500 aa8.01□□□□□ -1.13
VPS41-208ENST00000448833 CARNS1A5YM72 827 aa8□□□□□ -1.13
VPS41-208ENST00000448833 FAM86B1E9PN63 330 aa8□□□□□ -1.13
VPS41-208ENST00000448833 DDX39AO00148 427 aaKnown RBP8□□□□□ -1.13
VPS41-208ENST00000448833 DHX15O43143 795 aaKnown RBP8□□□□□ -1.13
VPS41-208ENST00000448833 HOXA2O43364 376 aa8□□□□□ -1.13
VPS41-208ENST00000448833 CDKL5O76039 1030 aa8□□□□□ -1.13
VPS41-208ENST00000448833 CCNE2O96020 404 aa8□□□□□ -1.13
VPS41-208ENST00000448833 MMP1P03956 469 aa8□□□□□ -1.13
VPS41-208ENST00000448833 FAM86B2P0C5J1 330 aa8□□□□□ -1.13
VPS41-208ENST00000448833 ZSCAN20P17040 1043 aaPredicted RBP8□□□□□ -1.13
VPS41-208ENST00000448833 XBP1P17861 261 aa8□□□□□ -1.13
VPS41-208ENST00000448833 PDIA3P30101 505 aaKnown RBP8□□□□□ -1.13
VPS41-208ENST00000448833 SARSP49591 514 aaKnown RBP8□□□□□ -1.13
VPS41-208ENST00000448833 DNM2P50570 870 aa8□□□□□ -1.13
VPS41-208ENST00000448833 JAK3P52333 1124 aa8□□□□□ -1.13
VPS41-208ENST00000448833 NLRP5P59047 1200 aa8□□□□□ -1.13
VPS41-208ENST00000448833 UBE3AQ05086 875 aa8□□□□□ -1.13
VPS41-208ENST00000448833 SSRP1Q08945 709 aaKnown RBP8□□□□□ -1.13
VPS41-208ENST00000448833 COL9A3Q14050 684 aaPredicted RBP8□□□□□ -1.13
VPS41-208ENST00000448833 COL19A1Q14993 1142 aa8□□□□□ -1.13
VPS41-208ENST00000448833 PRR16Q569H4 304 aa8□□□□□ -1.13
VPS41-208ENST00000448833 TCEAL5Q5H9L2 206 aa8□□□□□ -1.13
VPS41-208ENST00000448833 TMEM31Q5JXX7 168 aa8□□□□□ -1.13
VPS41-208ENST00000448833 EP400NLQ6ZTU2 488 aa8□□□□□ -1.13
VPS41-208ENST00000448833 FAM178BQ8IXR5 827 aa8□□□□□ -1.13
VPS41-208ENST00000448833 EXOC8Q8IYI6 725 aa8□□□□□ -1.13
VPS41-208ENST00000448833 KIAA0319LQ8IZA0 1049 aa8□□□□□ -1.13
VPS41-208ENST00000448833 GJD3Q8N144 294 aa8□□□□□ -1.13
VPS41-208ENST00000448833 CRIPAKQ8N1N5 446 aa8□□□□□ -1.13
VPS41-208ENST00000448833 METTL13Q8N6R0 699 aa8□□□□□ -1.13
VPS41-208ENST00000448833 PGBD1Q96JS3 809 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms