RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 CPLX2Q6PUV4 134 aaKnown RBP23.48■■□□□ 1.35
SDC1-205ENST00000447124 ZNF689Q96CS4 500 aaPredicted RBP23.48■■□□□ 1.35
SDC1-205ENST00000447124 RIT2Q99578 217 aa23.48■■□□□ 1.35
SDC1-205ENST00000447124 SLKQ9H2G2 1235 aaPredicted RBP23.48■■□□□ 1.35
SDC1-205ENST00000447124 DISC1Q9NRI5 854 aa23.48■■□□□ 1.35
SDC1-205ENST00000447124 GJB4Q9NTQ9 266 aa23.48■■□□□ 1.35
SDC1-205ENST00000447124 EVPLQ92817 2033 aa23.48■■□□□ 1.35
SDC1-205ENST00000447124 KCNQ1P51787 676 aa23.47■■□□□ 1.35
SDC1-205ENST00000447124 ANAPC15P60006 121 aa23.47■■□□□ 1.35
SDC1-205ENST00000447124 ADAMTS19Q8TE59 1207 aa23.47■■□□□ 1.35
SDC1-205ENST00000447124 TMEM40Q8WWA1 233 aa23.47■■□□□ 1.35
SDC1-205ENST00000447124 MBOAT7Q96N66 472 aa23.47■■□□□ 1.35
SDC1-205ENST00000447124 SAMD11Q96NU1 681 aa23.47■■□□□ 1.35
SDC1-205ENST00000447124 UNC45AQ9H3U1 944 aa23.47■■□□□ 1.35
SDC1-205ENST00000447124 COG5Q9UP83 839 aa23.47■■□□□ 1.35
SDC1-205ENST00000447124 NOC2LQ9Y3T9 749 aaKnown RBP23.47■■□□□ 1.35
SDC1-205ENST00000447124 SAMM50Q9Y512 469 aa23.47■■□□□ 1.35
SDC1-205ENST00000447124 WDR64B1ANS9 1081 aa23.46■■□□□ 1.35
SDC1-205ENST00000447124 H3BNC9 293 aa23.46■■□□□ 1.35
SDC1-205ENST00000447124 PSMD10O75832 226 aa23.46■■□□□ 1.35
SDC1-205ENST00000447124 DGKIO75912 1065 aa23.46■■□□□ 1.35
SDC1-205ENST00000447124 COL4A4P53420 1690 aaPredicted RBP23.46■■□□□ 1.35
SDC1-205ENST00000447124 AK2P54819 239 aa23.46■■□□□ 1.35
SDC1-205ENST00000447124 GPM6BQ13491 265 aa23.46■■□□□ 1.35
SDC1-205ENST00000447124 UGCGQ16739 394 aa23.46■■□□□ 1.35
SDC1-205ENST00000447124 GALNT17Q6IS24 598 aa23.46■■□□□ 1.35
SDC1-205ENST00000447124 B3GNT9Q6UX72 402 aa23.46■■□□□ 1.35
SDC1-205ENST00000447124 FAM177A1Q8N128 213 aaPredicted RBP23.46■■□□□ 1.35
SDC1-205ENST00000447124 FIBCD1Q8N539 461 aa23.46■■□□□ 1.35
SDC1-205ENST00000447124 PHF20Q9BVI0 1012 aa23.46■■□□□ 1.35
SDC1-205ENST00000447124 C22orf23Q9BZE7 217 aa23.46■■□□□ 1.35
SDC1-205ENST00000447124 ERVK-5Q9HDB9 667 aa23.46■■□□□ 1.35
SDC1-205ENST00000447124 TCF20Q9UGU0 1960 aaKnown RBP23.46■■□□□ 1.35
SDC1-205ENST00000447124 GINS2Q9Y248 185 aa23.46■■□□□ 1.35
SDC1-205ENST00000447124 XIRP2A4UGR9 3374 aa23.46■■□□□ 1.35
SDC1-205ENST00000447124 MYH9P35579 1960 aaKnown RBP23.45■■□□□ 1.35
SDC1-205ENST00000447124 LOXHD1Q8IVV2 1947 aa23.45■■□□□ 1.35
SDC1-205ENST00000447124 MGEA5O60502 916 aa23.45■■□□□ 1.34
SDC1-205ENST00000447124 GAS7O60861 476 aa23.45■■□□□ 1.34
SDC1-205ENST00000447124 SEC24BO95487 1268 aa23.45■■□□□ 1.34
SDC1-205ENST00000447124 PAK2Q13177 524 aa23.45■■□□□ 1.34
SDC1-205ENST00000447124 LRCH2Q5VUJ6 765 aa23.45■■□□□ 1.34
SDC1-205ENST00000447124 HLA-CQ95604 372 aa23.45■■□□□ 1.34
SDC1-205ENST00000447124 PPP1R16BQ96T49 567 aa23.45■■□□□ 1.34
SDC1-205ENST00000447124 TEKT3Q9BXF9 490 aa23.45■■□□□ 1.34
SDC1-205ENST00000447124 FTHL17Q9BXU8 183 aa23.45■■□□□ 1.34
SDC1-205ENST00000447124 CHMP2AO43633 222 aa23.44■■□□□ 1.34
SDC1-205ENST00000447124 GPR32O75388 356 aa23.44■■□□□ 1.34
SDC1-205ENST00000447124 BMPR1AP36894 532 aa23.44■■□□□ 1.34
SDC1-205ENST00000447124 NFX1Q12986 1120 aaKnown RBP23.44■■□□□ 1.34
SDC1-205ENST00000447124 INF2Q27J81 1249 aa23.44■■□□□ 1.34
SDC1-205ENST00000447124 LINC01465Q8N7H1 131 aa23.44■■□□□ 1.34
SDC1-205ENST00000447124 MRPL38Q96DV4 380 aaKnown RBP23.44■■□□□ 1.34
SDC1-205ENST00000447124 NECAB3Q96P71 396 aaPredicted RBP23.44■■□□□ 1.34
SDC1-205ENST00000447124 TCEAL9Q9UHQ7 104 aa23.44■■□□□ 1.34
SDC1-205ENST00000447124 TNFRSF10AO00220 468 aa23.43■■□□□ 1.34
SDC1-205ENST00000447124 STBD1O95210 358 aa23.43■■□□□ 1.34
SDC1-205ENST00000447124 VTNP04004 478 aa23.43■■□□□ 1.34
SDC1-205ENST00000447124 FDPSP14324 419 aaKnown RBP23.43■■□□□ 1.34
SDC1-205ENST00000447124 NONOQ15233 471 aaKnown RBP eCLIP23.43■■□□□ 1.34
SDC1-205ENST00000447124 AAK1Q2M2I8 961 aa23.43■■□□□ 1.34
SDC1-205ENST00000447124 METTL13Q8N6R0 699 aa23.43■■□□□ 1.34
SDC1-205ENST00000447124 NECAB1Q8N987 351 aa23.43■■□□□ 1.34
SDC1-205ENST00000447124 ETNPPLQ8TBG4 499 aa23.43■■□□□ 1.34
SDC1-205ENST00000447124 OXER1Q8TDS5 423 aa23.43■■□□□ 1.34
SDC1-205ENST00000447124 NRBP2Q9NSY0 501 aa23.43■■□□□ 1.34
SDC1-205ENST00000447124 ST3GAL5Q9UNP4 418 aa23.43■■□□□ 1.34
SDC1-205ENST00000447124 COL4A6Q14031 1691 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 ADGRA3Q8IWK6 1321 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 STK36Q9NRP7 1315 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP23.42■■□□□ 1.34
SDC1-205ENST00000447124 C5orf67F2Z3F1 127 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 MAGEB2O15479 319 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 RPS6KA5O75582 802 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 CDKL5O76039 1030 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 LARGE1O95461 756 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 OATP04181 439 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 SFNP31947 248 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 CLCN3P51790 818 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 CRYBB1P53674 252 aaPredicted RBP23.42■■□□□ 1.34
SDC1-205ENST00000447124 BTG3Q14201 252 aaPredicted RBP23.42■■□□□ 1.34
SDC1-205ENST00000447124 ME3Q16798 604 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 KIZQ2M2Z5 673 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 EFCAB12Q6NXP0 572 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 MOXD1Q6UVY6 613 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 KRT25Q7Z3Z0 450 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 NPAS4Q8IUM7 802 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 CLP1Q92989 425 aaKnown RBP23.42■■□□□ 1.34
SDC1-205ENST00000447124 FAM167AQ96KS9 214 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 UHRF1Q96T88 793 aaPredicted RBP23.42■■□□□ 1.34
SDC1-205ENST00000447124 OSMRQ99650 979 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 CEP131Q9UPN4 1083 aa23.42■■□□□ 1.34
SDC1-205ENST00000447124 SLC37A4O43826 429 aa23.41■■□□□ 1.34
SDC1-205ENST00000447124 RB1P06400 928 aa23.41■■□□□ 1.34
SDC1-205ENST00000447124 CTNNB1P35222 781 aa23.41■■□□□ 1.34
SDC1-205ENST00000447124 GATMP50440 423 aa23.41■■□□□ 1.34
SDC1-205ENST00000447124 JAK3P52333 1124 aa23.41■■□□□ 1.34
SDC1-205ENST00000447124 PRKCEQ02156 737 aa23.41■■□□□ 1.34
SDC1-205ENST00000447124 TARBP2Q15633 366 aaKnown RBP23.41■■□□□ 1.34
SDC1-205ENST00000447124 MIER3Q7Z3K6 550 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms