RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 STXBP3O00186 592 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 SOX1O00570 391 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 P4HA2O15460 535 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 RNGTTO60942 597 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 SLITRK5O94991 958 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 FSBPO95073 299 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 AVPP01185 164 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 CHGBP05060 677 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 MAPTP10636 758 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 MTHFD2P13995 350 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 AKR1B1P15121 316 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 CD33P20138 364 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 GPR3P46089 330 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 SEPHS1P49903 392 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 POU4F1Q01851 419 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 FBXO38Q6PIJ6 1188 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 OXR1Q8N573 874 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 USHBP1Q8N6Y0 703 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 SSH1Q8WYL5 1049 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 MS4A5Q9H3V2 200 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 DBNDD1Q9H9R9 158 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ZCCHC17Q9NP64 241 aaKnown RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ZSWIM5Q9P217 1185 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 GRHPRQ9UBQ7 328 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 L1RE1Q9UN81 338 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 TMEM98Q9Y2Y6 226 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 FOXN3O00409 490 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 MYO1BO43795 1136 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ZNF862O60290 1169 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 LTBRP36941 435 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 STAT1P42224 750 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 PFKPQ01813 784 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 SPARCL1Q14515 664 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 PLCL1Q15111 1095 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 UGT8Q16880 541 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 KIZQ2M2Z5 673 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 FAM47EQ6ZV65 393 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 KDELC2Q7Z4H8 507 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 KRT78Q8N1N4 520 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 C7orf31Q8N865 590 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ZNF513Q8N8E2 541 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 LSMEM1Q8N8F7 131 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ZNF610Q8N9Z0 462 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 KCT2Q8NC54 265 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 PCDH19Q8TAB3 1148 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 PUM2Q8TB72 1066 aaKnown RBP eCLIP2.66□□□□□ -1.986e-7■■□□□ 13.5
CCDC88A-208ENST00000444458 RNF217Q8TC41 542 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 LMBR1Q8WVP7 490 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 DPF3Q92784 378 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 PHKBQ93100 1093 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 BAG1Q99933 345 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ANO3Q9BYT9 981 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 CXorf56Q9H5V9 222 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 DIAPH3Q9NSV4 1193 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 NSMCE4AQ9NXX6 385 aa2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 ORC3Q9UBD5 711 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 NAP1L2Q9ULW6 460 aaPredicted RBP2.66□□□□□ -1.98
CCDC88A-208ENST00000444458 CECR2Q9BXF3 1484 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 A0A1W2PPL8 197 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 EYA2O00167 538 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 AP3D1O14617 1153 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 DKC1O60832 514 aaKnown RBP eCLIP2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 SOAT2O75908 522 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 DDX58O95786 925 aaKnown RBP2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 ALDH2P05091 517 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 IDEP14735 1019 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 BRAFP15056 766 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 AGXTP21549 392 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 SCP2P22307 547 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 XPAP23025 273 aaPredicted RBP2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 GALNSP34059 522 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 ALDH9A1P49189 494 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 ITGA8P53708 1063 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 DRG2P55039 364 aaKnown RBP2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 ZNF445P59923 1031 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 PMS2P11Q13670 270 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 CT83Q5H943 113 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 SLC35F1Q5T1Q4 408 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 ZNF787Q6DD87 383 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 CCDC62Q6P9F0 684 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 SYDE1Q6ZW31 735 aaPredicted RBP2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 CYP4X1Q8N118 509 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 CNDP2Q96KP4 475 aaKnown RBP2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 NT5C1BQ96P26 610 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 SLC30A3Q99726 388 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 TTLL2Q9BWV7 592 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 LSM14BQ9BX40 385 aaKnown RBP2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 ZDHHC5Q9C0B5 715 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 IPPKQ9H8X2 491 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 JMJD4Q9H9V9 463 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 PIDD1Q9HB75 910 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 ARGLU1Q9NWB6 273 aaPredicted RBP2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 FEZ2Q9UHY8 353 aaPredicted RBP2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 ZHX1Q9UKY1 873 aaPredicted RBP2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 NR2E3Q9Y5X4 410 aa2.65□□□□□ -1.98
CCDC88A-208ENST00000444458 ARVCFO00192 962 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 APOL3O95236 402 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 FTLP02792 175 aaPredicted RBP2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 DNTTP04053 509 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 CLEC2LP0C7M8 214 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms