RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 TBKBP1A7MCY6 615 aa16.49■□□□□ 0.23
HMGN1-208ENST00000443046 DDAH1O94760 285 aa16.49■□□□□ 0.23
HMGN1-208ENST00000443046 ATG7O95352 703 aa16.49■□□□□ 0.23
HMGN1-208ENST00000443046 PLCB3Q01970 1234 aa16.49■□□□□ 0.23
HMGN1-208ENST00000443046 SLC24A5Q71RS6 500 aa16.49■□□□□ 0.23
HMGN1-208ENST00000443046 RALYLQ86SE5 291 aaKnown RBP16.49■□□□□ 0.23
HMGN1-208ENST00000443046 ZNF654Q8IZM8 581 aa16.49■□□□□ 0.23
HMGN1-208ENST00000443046 COLGALT1Q8NBJ5 622 aa16.49■□□□□ 0.23
HMGN1-208ENST00000443046 TMEM40Q8WWA1 233 aa16.49■□□□□ 0.23
HMGN1-208ENST00000443046 AZI2Q9H6S1 392 aa16.49■□□□□ 0.23
HMGN1-208ENST00000443046 CDHR5Q9HBB8 845 aa16.49■□□□□ 0.23
HMGN1-208ENST00000443046 KCNH7Q9NS40 1196 aa16.49■□□□□ 0.23
HMGN1-208ENST00000443046 C1orf112Q9NSG2 853 aa16.49■□□□□ 0.23
HMGN1-208ENST00000443046 TMEM260Q9NX78 707 aa16.49■□□□□ 0.23
HMGN1-208ENST00000443046 HCSTQ9UBK5 93 aa16.49■□□□□ 0.23
HMGN1-208ENST00000443046 SEC63Q9UGP8 760 aaKnown RBP16.49■□□□□ 0.23
HMGN1-208ENST00000443046 TRPC6Q9Y210 931 aa16.49■□□□□ 0.23
HMGN1-208ENST00000443046 NOC2LQ9Y3T9 749 aaKnown RBP16.49■□□□□ 0.23
HMGN1-208ENST00000443046 NFASCO94856 1347 aa16.48■□□□□ 0.23
HMGN1-208ENST00000443046 IGKV6D-21A0A0A0MT36 114 aa16.48■□□□□ 0.23
HMGN1-208ENST00000443046 H0Y858 1186 aa16.48■□□□□ 0.23
HMGN1-208ENST00000443046 GALR2O43603 387 aaPredicted RBP16.48■□□□□ 0.23
HMGN1-208ENST00000443046 PLEKHA8P1O95397 391 aa16.48■□□□□ 0.23
HMGN1-208ENST00000443046 KIF5BP33176 963 aa16.48■□□□□ 0.23
HMGN1-208ENST00000443046 STAT5BP51692 787 aa16.48■□□□□ 0.23
HMGN1-208ENST00000443046 ACTR2P61160 394 aa16.48■□□□□ 0.23
HMGN1-208ENST00000443046 NFX1Q12986 1120 aaKnown RBP16.48■□□□□ 0.23
HMGN1-208ENST00000443046 UBE2SQ16763 222 aa16.48■□□□□ 0.23
HMGN1-208ENST00000443046 KIAA0319LQ8IZA0 1049 aa16.48■□□□□ 0.23
HMGN1-208ENST00000443046 CTCFLQ8NI51 663 aaPredicted RBP16.48■□□□□ 0.23
HMGN1-208ENST00000443046 MRPS27Q92552 414 aaKnown RBP16.48■□□□□ 0.23
HMGN1-208ENST00000443046 ADAM2Q99965 735 aa16.48■□□□□ 0.23
HMGN1-208ENST00000443046 MXRA8Q9BRK3 442 aa16.48■□□□□ 0.23
HMGN1-208ENST00000443046 MYL10Q9BUA6 226 aa16.48■□□□□ 0.23
HMGN1-208ENST00000443046 RNF216Q9NWF9 866 aaPredicted RBP16.48■□□□□ 0.23
HMGN1-208ENST00000443046 PCDHA6Q9UN73 950 aa16.48■□□□□ 0.23
HMGN1-208ENST00000443046 PCDHA8Q9Y5H6 950 aa16.48■□□□□ 0.23
HMGN1-208ENST00000443046 GVINP1Q7Z2Y8 2422 aa16.48■□□□□ 0.23
HMGN1-208ENST00000443046 EVPLQ92817 2033 aa16.48■□□□□ 0.23
HMGN1-208ENST00000443046 SRGAP2BP0DMP2 458 aa16.47■□□□□ 0.23
HMGN1-208ENST00000443046 HOXB8P17481 243 aaPredicted RBP16.47■□□□□ 0.23
HMGN1-208ENST00000443046 KLRC1P26715 233 aa16.47■□□□□ 0.23
HMGN1-208ENST00000443046 TECP42680 631 aa16.47■□□□□ 0.23
HMGN1-208ENST00000443046 SLC26A2P50443 739 aa16.47■□□□□ 0.23
HMGN1-208ENST00000443046 THNSL1Q8IYQ7 743 aa16.47■□□□□ 0.23
HMGN1-208ENST00000443046 CYP2W1Q8TAV3 490 aa16.47■□□□□ 0.23
HMGN1-208ENST00000443046 MTA3Q9BTC8 594 aa16.47■□□□□ 0.23
HMGN1-208ENST00000443046 ELAC1Q9H777 363 aaKnown RBP16.47■□□□□ 0.23
HMGN1-208ENST00000443046 ST3GAL5Q9UNP4 418 aa16.47■□□□□ 0.23
HMGN1-208ENST00000443046 CACNA1AO00555 2505 aa16.47■□□□□ 0.23
HMGN1-208ENST00000443046 DNAH14Q0VDD8 3507 aa16.46■□□□□ 0.23
HMGN1-208ENST00000443046 SPDYE3A6NKU9 549 aa16.46■□□□□ 0.23
HMGN1-208ENST00000443046 HIDE1A8MVS5 230 aa16.46■□□□□ 0.23
HMGN1-208ENST00000443046 RPS6KA5O75582 802 aa16.46■□□□□ 0.23
HMGN1-208ENST00000443046 GSPT1P15170 499 aaKnown RBP16.46■□□□□ 0.23
HMGN1-208ENST00000443046 LAG3P18627 525 aa16.46■□□□□ 0.23
HMGN1-208ENST00000443046 NBL1P41271 181 aa16.46■□□□□ 0.23
HMGN1-208ENST00000443046 GNAQP50148 359 aa16.46■□□□□ 0.23
HMGN1-208ENST00000443046 ITGB3BPQ13352 177 aaPredicted RBP16.46■□□□□ 0.23
HMGN1-208ENST00000443046 SPOUT1Q5T280 376 aaKnown RBP16.46■□□□□ 0.23
HMGN1-208ENST00000443046 LRRC55Q6ZSA7 311 aa16.46■□□□□ 0.23
HMGN1-208ENST00000443046 ASCL5Q7RTU5 278 aa16.46■□□□□ 0.23
HMGN1-208ENST00000443046 UBALD2Q8IYN6 164 aa16.46■□□□□ 0.23
HMGN1-208ENST00000443046 KREMEN2Q8NCW0 462 aa16.46■□□□□ 0.23
HMGN1-208ENST00000443046 NGRNQ9NPE2 291 aaKnown RBP16.46■□□□□ 0.23
HMGN1-208ENST00000443046 TMEM161AQ9NX61 479 aa16.46■□□□□ 0.23
HMGN1-208ENST00000443046 DENND3A2RUS2 1198 aa16.45■□□□□ 0.22
HMGN1-208ENST00000443046 ZBTB42B2RXF5 422 aa16.45■□□□□ 0.22
HMGN1-208ENST00000443046 ARP10275 920 aa16.45■□□□□ 0.22
HMGN1-208ENST00000443046 PDE4AP27815 886 aa16.45■□□□□ 0.22
HMGN1-208ENST00000443046 APOBRQ0VD83 1088 aa16.45■□□□□ 0.22
HMGN1-208ENST00000443046 DSC3Q14574 896 aa16.45■□□□□ 0.22
HMGN1-208ENST00000443046 ODR4Q5SWX8 454 aa16.45■□□□□ 0.22
HMGN1-208ENST00000443046 PLPP4Q5VZY2 271 aa16.45■□□□□ 0.22
HMGN1-208ENST00000443046 CMTR1Q8N1G2 835 aaKnown RBP16.45■□□□□ 0.22
HMGN1-208ENST00000443046 RNF19AQ9NV58 838 aa16.45■□□□□ 0.22
HMGN1-208ENST00000443046 PRR23AA6NEV1 266 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 GPR182O15218 404 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 HBP1O60381 514 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 BRD1O95696 1058 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 FGFR1P11362 822 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 CHMLP26374 656 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 ABHD15Q6UXT9 468 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 FAM228AQ86W67 206 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 TEX2Q8IWB9 1127 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 TMEM105Q8N8V8 129 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 MAP4K1Q92918 833 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 CASD1Q96PB1 797 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 TCF25Q9BQ70 676 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 SDF4Q9BRK5 362 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 APOL5Q9BWW9 433 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 TMEM117Q9H0C3 514 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 ADAM7Q9H2U9 754 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 ATP6V0A4Q9HBG4 840 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 AGO4Q9HCK5 861 aaKnown RBP16.44■□□□□ 0.22
HMGN1-208ENST00000443046 PUF60Q9UHX1 559 aaKnown RBP16.44■□□□□ 0.22
HMGN1-208ENST00000443046 SORCS3Q9UPU3 1222 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 NR2E1Q9Y466 385 aa16.44■□□□□ 0.22
HMGN1-208ENST00000443046 COL1A2P08123 1366 aa16.43■□□□□ 0.22
HMGN1-208ENST00000443046 C2CD4DB7Z1M9 353 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms