RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 IGDCC4Q8TDY8 1250 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 STAG1Q8WVM7 1258 aa4.91□□□□□ -1.62
VPS41-207ENST00000439468 H2AFY2Q9P0M6 372 aaPredicted RBP4.91□□□□□ -1.62
VPS41-207ENST00000439468 NPEPPSL1A6NEC2 478 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 FAM90A27PA6NNH2 459 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 B4E1Z4 1266 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 ZNF561-AS1K7EIQ3 104 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 CBX4O00257 560 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 SCDO00767 359 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 WNT9AO14904 365 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 KRT37O76014 449 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 HSP90B1P14625 803 aaKnown RBP4.9□□□□□ -1.63
VPS41-207ENST00000439468 CDK11BP21127 795 aaKnown RBP4.9□□□□□ -1.63
VPS41-207ENST00000439468 FLT3P36888 993 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 MECP2P51608 486 aaKnown RBP4.9□□□□□ -1.63
VPS41-207ENST00000439468 DBPQ10586 325 aaPredicted RBP4.9□□□□□ -1.63
VPS41-207ENST00000439468 EFEMP1Q12805 493 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 LIMS2Q7Z4I7 341 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 IFNL2Q8IZJ0 200 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 AHI1Q8N157 1196 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 ATL2Q8NHH9 583 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 WDR48Q8TAF3 677 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 GPR101Q96P66 508 aaPredicted RBP4.9□□□□□ -1.63
VPS41-207ENST00000439468 GPR20Q99678 358 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 CELF4Q9BZC1 486 aaKnown RBP4.9□□□□□ -1.63
VPS41-207ENST00000439468 BRINP2Q9C0B6 783 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 SMURF1Q9HCE7 757 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 SMPD4Q9NXE4 827 aa4.9□□□□□ -1.63
VPS41-207ENST00000439468 CNOT11Q9UKZ1 510 aaKnown RBP4.9□□□□□ -1.63
VPS41-207ENST00000439468 PTPDC1A2A3K4 754 aa4.89□□□□□ -1.63
VPS41-207ENST00000439468 NEMP1O14524 444 aa4.89□□□□□ -1.63
VPS41-207ENST00000439468 KNG1P01042 644 aa4.89□□□□□ -1.63
VPS41-207ENST00000439468 COL6A1P12109 1028 aa4.89□□□□□ -1.63
VPS41-207ENST00000439468 WDR72Q3MJ13 1102 aa4.89□□□□□ -1.63
VPS41-207ENST00000439468 ZNF568Q3ZCX4 644 aa4.89□□□□□ -1.63
VPS41-207ENST00000439468 CPZQ66K79 652 aa4.89□□□□□ -1.63
VPS41-207ENST00000439468 HHIPL2Q6UWX4 724 aa4.89□□□□□ -1.63
VPS41-207ENST00000439468 DPP8Q6V1X1 898 aaPredicted RBP4.89□□□□□ -1.63
VPS41-207ENST00000439468 Q6ZUG5 572 aa4.89□□□□□ -1.63
VPS41-207ENST00000439468 C2orf69Q8N8R5 385 aa4.89□□□□□ -1.63
VPS41-207ENST00000439468 CHTF18Q8WVB6 975 aa4.89□□□□□ -1.63
VPS41-207ENST00000439468 MBD6Q96DN6 1003 aa4.89□□□□□ -1.63
VPS41-207ENST00000439468 BORCS6Q96GS4 357 aa4.89□□□□□ -1.63
VPS41-207ENST00000439468 KCND1Q9NSA2 647 aa4.89□□□□□ -1.63
VPS41-207ENST00000439468 THG1LQ9NWX6 298 aaKnown RBP4.89□□□□□ -1.63
VPS41-207ENST00000439468 DVL2O14641 736 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 HIP1RO75146 1068 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 RAB11FIP3O75154 756 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 KLHL18O94889 574 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 IL18BPO95998 194 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 F2P00734 622 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 CHGBP05060 677 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 ZBTB48P10074 688 aaPredicted RBP4.88□□□□□ -1.63
VPS41-207ENST00000439468 ATP2A2P16615 1042 aaKnown RBP4.88□□□□□ -1.63
VPS41-207ENST00000439468 PTGS1P23219 599 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 MC4RP32245 332 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 ADCYAP1R1P41586 468 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 MAGEA10P43363 369 aaPredicted RBP4.88□□□□□ -1.63
VPS41-207ENST00000439468 SCNN1BP51168 640 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 PPP2CBP62714 309 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 PPP2CAP67775 309 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 LACTBP83111 547 aaPredicted RBP4.88□□□□□ -1.63
VPS41-207ENST00000439468 DSG1Q02413 1049 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 CHST14Q8NCH0 376 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 C8orf49Q96NF6 230 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 PDGFDQ9GZP0 370 aaPredicted RBP4.88□□□□□ -1.63
VPS41-207ENST00000439468 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.88□□□□□ -1.63
VPS41-207ENST00000439468 SPTLC3Q9NUV7 552 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 DDX56Q9NY93 547 aaKnown RBP4.88□□□□□ -1.63
VPS41-207ENST00000439468 B4GALT6Q9UBX8 382 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 ST6GALNAC2Q9UJ37 374 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 ADAM29Q9UKF5 820 aa4.88□□□□□ -1.63
VPS41-207ENST00000439468 CLASP2O75122 1294 aaKnown RBP4.87□□□□□ -1.63
VPS41-207ENST00000439468 FKBP9O95302 570 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 NPTXRO95502 500 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 C4BPAP04003 597 aaKnown RBP4.87□□□□□ -1.63
VPS41-207ENST00000439468 MMEP08473 750 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 ADCY8P40145 1251 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 RRADP55042 308 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 IL2P60568 153 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 TMPRSS15P98073 1019 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 STAT4Q14765 748 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 SEC23AQ15436 765 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 CREB3L3Q68CJ9 461 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 DBX2Q6ZNG2 339 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 FKBP9P1Q75LS8 142 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 OTOP2Q7RTS6 562 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 CIR1Q86X95 450 aaPredicted RBP4.87□□□□□ -1.63
VPS41-207ENST00000439468 HIPK4Q8NE63 616 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 OR2W6PQ8NHA6 318 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 WDR66Q8TBY9 1149 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 COG1Q8WTW3 980 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 USP7Q93009 1102 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 RBM15Q96T37 977 aaKnown RBP eCLIP4.87□□□□□ -1.63
VPS41-207ENST00000439468 ORAI3Q9BRQ5 295 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 TRIM8Q9BZR9 551 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 CCDC8Q9H0W5 538 aaPredicted RBP4.87□□□□□ -1.63
VPS41-207ENST00000439468 MS4A5Q9H3V2 200 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 VTA1Q9NP79 307 aa4.87□□□□□ -1.63
VPS41-207ENST00000439468 CABP5Q9NP86 173 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms