RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 TSPYL2Q9H2G4 693 aaPredicted RBP12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 ITM2BQ9Y287 266 aa12.96□□□□□ -0.34
CCDC88A-207ENST00000436346 TMEM247A6NEH6 219 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 MXD4Q14582 209 aaPredicted RBP12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 RBM46Q8TBY0 533 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 TNS3Q68CZ2 1445 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 ARID1BQ8NFD5 2236 aaPredicted RBP12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 DPYSL4O14531 572 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 SPATA33Q96N06 139 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 PUS7LQ9H0K6 701 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 FEM1BQ9UK73 627 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 ZBBXA8MT70 800 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 TTLL4Q14679 1199 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 MAN2A1Q16706 1144 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 SCYL3Q8IZE3 742 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 WHAMMQ8TF30 809 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 GSDMAQ96QA5 445 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 TMEM63CQ9P1W3 806 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 RBL2Q08999 1139 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 ADCK5Q3MIX3 580 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 TRIM67Q6ZTA4 783 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 OR6B3Q8NGW1 331 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 AATKQ6ZMQ8 1374 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 H3BRJ5 948 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 HSPA8P11142 646 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 HOXD10P28358 340 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 FKBP3Q00688 224 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 TRIM59Q8IWR1 403 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 PPP1R13BQ96KQ4 1090 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 MED4Q9NPJ6 270 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 TPX2Q9ULW0 747 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 FAN1Q9Y2M0 1017 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 CAPN7Q9Y6W3 813 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 IFNAR2P48551 515 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 SEPT2Q15019 361 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 ZNF568Q3ZCX4 644 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 ANKRD13CQ8N6S4 541 aa12.95□□□□□ -0.34
CCDC88A-207ENST00000436346 SUN1O94901 812 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 MYL1P05976 194 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 ART3Q13508 389 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 PKP1Q13835 747 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 SNX19Q92543 992 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 JRKLQ9Y4A0 524 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 RP1L1Q8IWN7 2480 aaPredicted RBP12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 KIF19Q2TAC6 998 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 PDE11AQ9HCR9 933 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 MYH7BA7E2Y1 1941 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 GOLGA8IPA6NC78 632 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 GOLGA8JA6NMD2 632 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 GPT2Q8TD30 523 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 SH3GLB2Q9NR46 395 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 CPDO75976 1380 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 PLEKHG2Q9H7P9 1386 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 CHEK2O96017 543 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 OR6B2Q6IFH4 312 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 KCNH4Q9UQ05 1017 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 ERBB3P21860 1342 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 MCAMP43121 646 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 RAET1EQ8TD07 263 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 STAG1Q8WVM7 1258 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 RNF181Q9P0P0 153 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 MTMR6Q9Y217 621 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 EFCAB8A8MWE9 144 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 PPP6R2O75170 966 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 ZMYND10O75800 440 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 TRIM42Q8IWZ5 723 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 FBXL13Q8NEE6 735 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 DRC3Q9H069 523 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 IFT172Q9UG01 1749 aa12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 NHEJ1Q9H9Q4 299 aaPredicted RBP12.94□□□□□ -0.34
CCDC88A-207ENST00000436346 BRD1O95696 1058 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 IFT43Q96FT9 208 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 FAM167AQ96KS9 214 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 DONSONQ9NYP3 566 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 ACSL3O95573 720 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 ATICP31939 592 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 ANO4Q32M45 955 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 PDCD7Q8N8D1 485 aaKnown RBP12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 CLDN3O15551 220 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 PEX3P56589 373 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 UBE2Q2Q8WVN8 375 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 INTUQ9ULD6 942 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 FRMPD1Q5SYB0 1578 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 TULP4Q9NRJ4 1543 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 PLTPP55058 493 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 OCRLQ01968 901 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 ZNF302Q9NR11 478 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 SASH1O94885 1247 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 MOCS3O95396 460 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 NFX1Q12986 1120 aaKnown RBP12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 NCLNQ969V3 563 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 TOPORSQ9NS56 1045 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 DAAM1Q9Y4D1 1078 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 F5H423 210 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 FCER1AP12319 257 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 PDCD2Q16342 344 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 ACCSLQ4AC99 568 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 PPP4R3CPQ6ZMV5 832 aa12.93□□□□□ -0.34
CCDC88A-207ENST00000436346 MAN1B1Q9UKM7 699 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms