RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 PER2O15055 1255 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 ALX3O95076 343 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 TXNP10599 105 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 THOP1P52888 689 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 ARHGAP4P98171 946 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 KCNB1Q14721 858 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 GPR158Q5T848 1215 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 ZSCAN25Q6NSZ9 544 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 PDXDC1Q6P996 788 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 CNKSR3Q6P9H4 555 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 ASCL5Q7RTU5 278 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 CATSPER4Q7RTX7 472 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 SIAH1Q8IUQ4 282 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 HMGB4Q8WW32 186 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 BICD1Q96G01 975 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 CNDP1Q96KN2 507 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 DNAJC7Q99615 494 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 ILKAPQ9H0C8 392 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 BAHCC1Q9P281 2608 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 BMP7P18075 431 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 MX2P20592 715 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 GDI1P31150 447 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 HERVK_113P62684 666 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 SNW1Q13573 536 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 C3orf38Q5JPI3 329 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 HGSNATQ68CP4 663 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 CYB5D1Q6P9G0 228 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 CERS3Q8IU89 383 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 CHPFQ8IZ52 775 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM98AQ8NCA5 519 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 LINC00116Q8NCU8 138 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 STK39Q9UEW8 545 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 USP20Q9Y2K6 914 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 RAXQ9Y2V3 346 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 YTHDC2Q9H6S0 1430 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 ELP1O95163 1332 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 TNKSO95271 1327 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 A0A1B0GTL3 188 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 B4E1Z4 1266 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 PRICKLE3O43900 615 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 GJB5O95377 273 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 MOCS3O95396 460 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 CDK4P11802 303 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 P4HA1P13674 534 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 MCM3P25205 808 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 MATKP42679 507 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 SLC1A4P43007 532 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 ACLYP53396 1101 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 CACNB3P54284 484 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 SF3A1Q15459 793 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 SEPT7Q16181 437 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 CHMP1BQ7LBR1 199 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 CCER1Q8TC90 406 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM212AQ96EL1 285 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 MAGED4Q96JG8 741 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 CCDC114Q96M63 670 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 GSDMAQ96QA5 445 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 ZIC5Q96T25 663 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 ARHGAP39Q9C0H5 1083 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 VAT1LQ9HCJ6 419 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 MAN1C1Q9NR34 630 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 PKD2L1Q9P0L9 805 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 DNMT3LQ9UJW3 386 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 ZBTB21Q9ULJ3 1066 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 EIF3LQ9Y262 564 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 FAN1Q9Y2M0 1017 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 SH3BP1Q9Y3L3 701 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 FLT4P35916 1363 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 PLEKHH1Q9ULM0 1364 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 PKDREJQ9NTG1 2253 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 ZNF804BA4D1E1 1349 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 ADGRA2Q96PE1 1338 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 SPAARA0A1B0GVQ0 90 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 C17orf102A2RUQ5 167 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 TSPY2A6NKD2 308 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 VSTM5A8MXK1 200 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 F5H423 210 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 hCG_1984214I3L0E3 225 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 MTSS1O43312 755 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 DKC1O60832 514 aaKnown RBP eCLIP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 FOSP01100 380 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 ALDH2P05091 517 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 TSPY3P0CV98 308 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 TSPY8P0CW00 308 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 CD1EP15812 388 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 ZNF24P17028 368 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 ITGAXP20702 1163 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 HOXA10P31260 410 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 VCPP55072 806 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 MTMR2Q13614 643 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 TRIP6Q15654 476 aaKnown RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 DGKDQ16760 1214 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 LETM2Q2VYF4 491 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 TMEM240Q5SV17 173 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 PHF19Q5T6S3 580 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 N4BP2L1Q5TBK1 243 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 PIK3R6Q5UE93 754 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM160B1Q5W0V3 765 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 OGFOD2Q6N063 350 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms