RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 MYOM1P52179 1685 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 ABLIM1O14639 778 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 PPM1GO15355 546 aaPredicted RBP3.29□□□□□ -1.88
VPS13A-208ENST00000423463 ASGR2P07307 311 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 IL2RBP14784 551 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 ATF2P15336 505 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 GRK2P25098 689 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 GRK3P35626 688 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 TNNT2P45379 298 aaPredicted RBP3.29□□□□□ -1.88
VPS13A-208ENST00000423463 NFE2L2Q16236 605 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 VMACQ2NL98 169 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 C2orf27AQ580R0 203 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 CC2D1BQ5T0F9 858 aaKnown RBP3.29□□□□□ -1.88
VPS13A-208ENST00000423463 MROH9Q5TGP6 573 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 LBX2Q6XYB7 198 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 LRP10Q7Z4F1 713 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 DCP2Q8IU60 420 aaKnown RBP3.29□□□□□ -1.88
VPS13A-208ENST00000423463 SCUBE1Q8IWY4 988 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 PIP4K2CQ8TBX8 421 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 SH3TC2Q8TF17 1288 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 PEX11GQ96HA9 241 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 MRFAP1L1Q96HT8 127 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 DHRS4Q9BTZ2 278 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 CNOT6Q9ULM6 557 aaKnown RBP3.29□□□□□ -1.88
VPS13A-208ENST00000423463 COA3Q9Y2R0 106 aaPredicted RBP3.29□□□□□ -1.88
VPS13A-208ENST00000423463 PCDHA9Q9Y5H5 950 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 X6R8D5 127 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 COL18A1P39060 1754 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 NRAPQ86VF7 1730 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 HRKO00198 91 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 NUAK1O60285 661 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 SOD2P04179 222 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 COL6A2P12110 1019 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 STAT5AP42229 794 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 GTF2A2P52657 109 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 SUMO1P63165 101 aaKnown RBP3.29□□□□□ -1.88
VPS13A-208ENST00000423463 SQSTM1Q13501 440 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 STK32CQ86UX6 486 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 CILP2Q8IUL8 1156 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 FAM26EQ8N5C1 309 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 ARRDC4Q8NCT1 418 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 THAP3Q8WTV1 239 aaPredicted RBP3.29□□□□□ -1.88
VPS13A-208ENST00000423463 KISS1RQ969F8 398 aaPredicted RBP3.29□□□□□ -1.88
VPS13A-208ENST00000423463 IPO9Q96P70 1041 aaKnown RBP3.29□□□□□ -1.88
VPS13A-208ENST00000423463 AP5M1Q9H0R1 490 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 IPPKQ9H8X2 491 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 EPB41L4AQ9HCS5 686 aaPredicted RBP3.29□□□□□ -1.88
VPS13A-208ENST00000423463 NUDT5Q9UKK9 219 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 FAN1Q9Y2M0 1017 aa3.29□□□□□ -1.88
VPS13A-208ENST00000423463 SMG6Q86US8 1419 aaKnown RBP3.29□□□□□ -1.88
VPS13A-208ENST00000423463 RASGRP1O95267 797 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 CRTAMO95727 393 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 SRGAP2CP0DJJ0 459 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 CFPP27918 469 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 MTHFSP49914 203 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 KIZQ2M2Z5 673 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 STEAP3Q658P3 488 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 LRRC56Q8IYG6 542 aaPredicted RBP3.28□□□□□ -1.88
VPS13A-208ENST00000423463 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.28□□□□□ -1.88
VPS13A-208ENST00000423463 RAPGEF4Q8WZA2 1011 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 PTPRN2Q92932 1015 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 SIGLEC10Q96LC7 697 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 DISP2A7MBM2 1401 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 KCNK3O14649 394 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 PPP1R12AO14974 1030 aaPredicted RBP3.28□□□□□ -1.88
VPS13A-208ENST00000423463 NKRFO15226 690 aaKnown RBP eCLIP3.28□□□□□ -1.88
VPS13A-208ENST00000423463 DGKIO75912 1065 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 LTFP02788 710 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 GUCY1A3Q02108 690 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 DDX10Q13206 875 aaKnown RBP3.28□□□□□ -1.88
VPS13A-208ENST00000423463 EIF4A2Q14240 407 aaKnown RBP3.28□□□□□ -1.88
VPS13A-208ENST00000423463 AMIGO3Q86WK7 504 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 FAM129CQ86XR2 697 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 RIOX2Q8IUF8 465 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 ADGRG2Q8IZP9 1017 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 MARCH10Q8NA82 808 aaPredicted RBP3.28□□□□□ -1.88
VPS13A-208ENST00000423463 SMARCC2Q8TAQ2 1214 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 SLC7A14Q8TBB6 771 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 ZCRB1Q8TBF4 217 aaKnown RBP3.28□□□□□ -1.88
VPS13A-208ENST00000423463 DDX11Q96FC9 970 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 TSPAN17Q96FV3 270 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 RBPJLQ9UBG7 517 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 KCTD3Q9Y597 815 aa3.28□□□□□ -1.88
VPS13A-208ENST00000423463 MRPL42Q9Y6G3 142 aaKnown RBP3.28□□□□□ -1.88
VPS13A-208ENST00000423463 ESYT3A0FGR9 886 aa3.28□□□□□ -1.89
VPS13A-208ENST00000423463 DBX1A6NMT0 343 aa3.28□□□□□ -1.89
VPS13A-208ENST00000423463 H7BY64 318 aa3.28□□□□□ -1.89
VPS13A-208ENST00000423463 IRS4O14654 1257 aaPredicted RBP3.28□□□□□ -1.89
VPS13A-208ENST00000423463 GNAT1P11488 350 aa3.28□□□□□ -1.89
VPS13A-208ENST00000423463 IGFBP6P24592 240 aaPredicted RBP3.28□□□□□ -1.89
VPS13A-208ENST00000423463 IL13P35225 146 aa3.28□□□□□ -1.89
VPS13A-208ENST00000423463 GPR85P60893 370 aa3.28□□□□□ -1.89
VPS13A-208ENST00000423463 JAG1P78504 1218 aa3.28□□□□□ -1.89
VPS13A-208ENST00000423463 FGD2Q7Z6J4 655 aa3.28□□□□□ -1.89
VPS13A-208ENST00000423463 TMEFF1Q8IYR6 380 aa3.28□□□□□ -1.89
VPS13A-208ENST00000423463 IFNL3Q8IZI9 196 aa3.28□□□□□ -1.89
VPS13A-208ENST00000423463 ZSWIM2Q8NEG5 633 aa3.28□□□□□ -1.89
VPS13A-208ENST00000423463 SEC14L1Q92503 715 aa3.28□□□□□ -1.89
VPS13A-208ENST00000423463 CFAP53Q96M91 514 aa3.28□□□□□ -1.89
VPS13A-208ENST00000423463 ALG1Q9BT22 464 aa3.28□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms