RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 IPPKQ9H8X2 491 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 BSDC1Q9NW68 430 aaPredicted RBP8.09□□□□□ -1.11
USP40-202ENST00000409945 FADS2P1A8MWK0 482 aa8.08□□□□□ -1.12
USP40-202ENST00000409945 RPS6KA4O75676 772 aa8.08□□□□□ -1.12
USP40-202ENST00000409945 ID4P47928 161 aa8.08□□□□□ -1.12
USP40-202ENST00000409945 NEK4P51957 841 aa8.08□□□□□ -1.12
USP40-202ENST00000409945 PIK3R6Q5UE93 754 aa8.08□□□□□ -1.12
USP40-202ENST00000409945 PDGFDQ9GZP0 370 aaPredicted RBP8.08□□□□□ -1.12
USP40-202ENST00000409945 CAAP1Q9H8G2 361 aa8.08□□□□□ -1.12
USP40-202ENST00000409945 ATP8A1Q9Y2Q0 1164 aa8.08□□□□□ -1.12
USP40-202ENST00000409945 MRC1P22897 1456 aa8.08□□□□□ -1.12
USP40-202ENST00000409945 EFCAB14O75071 495 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 SPINK2P20155 84 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 IGFALSP35858 605 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 STRN3Q13033 797 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 KCNAB2Q13303 367 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 ITPK1Q13572 414 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 ZCCHC8Q6NZY4 707 aaKnown RBP8.07□□□□□ -1.12
USP40-202ENST00000409945 ZNF790Q6PG37 636 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 SLCO6A1Q86UG4 719 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 PHACTR3Q96KR7 559 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 SP110Q9HB58 689 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 CBLCQ9ULV8 474 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 RWDD3Q9Y3V2 267 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 VIRMAQ69YN4 1812 aaKnown RBP8.07□□□□□ -1.12
USP40-202ENST00000409945 AQP7O14520 342 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 EYA4O95677 639 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 ASLP04424 464 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 POU3F2P20265 443 aaPredicted RBP8.07□□□□□ -1.12
USP40-202ENST00000409945 TRHRP34981 398 aaPredicted RBP8.07□□□□□ -1.12
USP40-202ENST00000409945 CRKLP46109 303 aaKnown RBP8.07□□□□□ -1.12
USP40-202ENST00000409945 HK2P52789 917 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 IGBP1P78318 339 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 SLC39A6Q13433 755 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 IFNL3Q8IZI9 196 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 NXPE1Q8N323 547 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 IL17REQ8NFR9 667 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 KCNJ15Q99712 375 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 PAK6Q9NQU5 681 aaPredicted RBP8.07□□□□□ -1.12
USP40-202ENST00000409945 SAMD15Q9P1V8 674 aa8.07□□□□□ -1.12
USP40-202ENST00000409945 SOD2P04179 222 aa8.06□□□□□ -1.12
USP40-202ENST00000409945 PYGMP11217 842 aa8.06□□□□□ -1.12
USP40-202ENST00000409945 TACR1P25103 407 aa8.06□□□□□ -1.12
USP40-202ENST00000409945 NFKB2Q00653 900 aa8.06□□□□□ -1.12
USP40-202ENST00000409945 TAF7Q15545 349 aaPredicted RBP8.06□□□□□ -1.12
USP40-202ENST00000409945 CDCA2Q69YH5 1023 aaPredicted RBP8.06□□□□□ -1.12
USP40-202ENST00000409945 MAPRE3Q9UPY8 281 aa8.06□□□□□ -1.12
USP40-202ENST00000409945 CEMIPQ8WUJ3 1361 aa8.06□□□□□ -1.12
USP40-202ENST00000409945 TRAF5O00463 557 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 KCNK3O14649 394 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 CFAP100Q494V2 611 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 RSPO2Q6UXX9 243 aaPredicted RBP8.05□□□□□ -1.12
USP40-202ENST00000409945 MCM10Q7L590 875 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 DTX1Q86Y01 620 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 ZC3H7AQ8IWR0 971 aaKnown RBP8.05□□□□□ -1.12
USP40-202ENST00000409945 CISD2Q8N5K1 135 aaKnown RBP8.05□□□□□ -1.12
USP40-202ENST00000409945 RUNDC1Q96C34 613 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 ALPK1Q96QP1 1244 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 MARCH2Q9P0N8 246 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 SLC5A6Q9Y289 635 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 ADAMTS7Q9UKP4 1686 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 TUBGCP6Q96RT7 1819 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 UBR3Q6ZT12 1888 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 TCRBV5S4A2TA0A5A2 114 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 PRNPP04156 253 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 RIPK4P57078 832 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 SLC51AQ86UW1 340 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 DNAJC10Q8IXB1 793 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.05□□□□□ -1.12
USP40-202ENST00000409945 SYT17Q9BSW7 474 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 BRINP2Q9C0B6 783 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 IMPACTQ9P2X3 320 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 HEG1Q9ULI3 1381 aa8.05□□□□□ -1.12
USP40-202ENST00000409945 M0R2C6 588 aa8.04□□□□□ -1.12
USP40-202ENST00000409945 TBC1D8O95759 1140 aa8.04□□□□□ -1.12
USP40-202ENST00000409945 SNRPA1P09661 255 aaKnown RBP8.04□□□□□ -1.12
USP40-202ENST00000409945 CDK11BP21127 795 aaKnown RBP8.04□□□□□ -1.12
USP40-202ENST00000409945 CALD1Q05682 793 aaKnown RBP8.04□□□□□ -1.12
USP40-202ENST00000409945 CEP128Q6ZU80 1094 aa8.04□□□□□ -1.12
USP40-202ENST00000409945 PLEKHO2Q8TD55 490 aa8.04□□□□□ -1.12
USP40-202ENST00000409945 CHAMP1Q96JM3 812 aa8.04□□□□□ -1.12
USP40-202ENST00000409945 ZFYVE21Q9BQ24 234 aa8.04□□□□□ -1.12
USP40-202ENST00000409945 H2AFY2Q9P0M6 372 aaPredicted RBP8.04□□□□□ -1.12
USP40-202ENST00000409945 TMEM59LQ9UK28 342 aa8.04□□□□□ -1.12
USP40-202ENST00000409945 COL5A3P25940 1745 aaPredicted RBP8.04□□□□□ -1.12
USP40-202ENST00000409945 CICQ96RK0 1608 aaPredicted RBP8.03□□□□□ -1.12
USP40-202ENST00000409945 NEMP1O14524 444 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 COBLO75128 1261 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 CYP19A1P11511 503 aaPredicted RBP8.03□□□□□ -1.12
USP40-202ENST00000409945 YBX3P16989 372 aaKnown RBP eCLIP8.03□□□□□ -1.12
USP40-202ENST00000409945 GRK2P25098 689 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 GRK3P35626 688 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 DNM2P50570 870 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 RTP1P59025 263 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 ANAPC15P60006 121 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 PAK1Q13153 545 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 GPR162Q16538 588 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 HSF5Q4G112 596 aaPredicted RBP8.03□□□□□ -1.12
USP40-202ENST00000409945 CYP2R1Q6VVX0 501 aa8.03□□□□□ -1.12
USP40-202ENST00000409945 CEP68Q76N32 757 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms