RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 RIPPLY1Q0D2K3 151 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 AKAP4Q5JQC9 854 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 TBC1D9BQ66K14 1250 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 GPR141Q7Z602 305 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 GCNT4Q9P109 453 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 ATP10DQ9P241 1426 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 ABLIM1O14639 778 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 SRGAP2CP0DJJ0 459 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 PMS2P54278 862 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 TNNI3KQ59H18 835 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 ZNF579Q8NAF0 562 aaKnown RBP13.76□□□□□ -0.21
COL6A3-206ENST00000409809 ABHD10Q9NUJ1 306 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 ARPP21Q9UBL0 812 aaPredicted RBP13.76□□□□□ -0.21
COL6A3-206ENST00000409809 PA2G4Q9UQ80 394 aaKnown RBP13.76□□□□□ -0.21
COL6A3-206ENST00000409809 FPGT-TNNI3KV9GXZ4 949 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 hCG_2014768A0A024R1R8 64 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 ACSL3O95573 720 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 APOA4P06727 396 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 CSTF3Q12996 717 aaKnown RBP13.76□□□□□ -0.21
COL6A3-206ENST00000409809 ARMCX4Q5H9R4 360 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 SNF8Q96H20 258 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 CCT7Q99832 543 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 OSBPL3Q9H4L5 887 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 TNRQ92752 1358 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 FAM83GA6ND36 823 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 PSMA3P25788 255 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 BLIDQ8IZY5 108 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 PSMC2P35998 433 aaKnown RBP13.76□□□□□ -0.21
COL6A3-206ENST00000409809 TRAPPC9Q96Q05 1148 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 VCPKMTQ9H867 229 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 SLC4A7Q9Y6M7 1214 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 SOWAHDA6NJG2 315 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 PDE6AP16499 860 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 RABGAP1LQ5R372 815 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 LRCH1Q9Y2L9 728 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 ATXN2Q99700 1313 aaKnown RBP13.76□□□□□ -0.21
COL6A3-206ENST00000409809 E7EWF7 191 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 H7C0C1 242 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 CAPN9O14815 690 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 SPAG6O75602 509 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 TSPAN9O75954 239 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 ATP5BP06576 529 aaKnown RBP13.76□□□□□ -0.21
COL6A3-206ENST00000409809 ATP5OP48047 213 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 NT5C1BQ96P26 610 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 RNF26Q9BY78 433 aaPredicted RBP13.76□□□□□ -0.21
COL6A3-206ENST00000409809 EDEM3Q9BZQ6 932 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 V9GY48 417 aaPredicted RBP13.76□□□□□ -0.21
COL6A3-206ENST00000409809 KRT14P02533 472 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 APOA5Q6Q788 366 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 IL17RAQ96F46 866 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 ASNA1O43681 348 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 TXKP42681 527 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 TAB1Q15750 504 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 KIF19Q2TAC6 998 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 FAM26FQ5R3K3 315 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 ZNF473Q8WTR7 871 aaKnown RBP13.75□□□□□ -0.21
COL6A3-206ENST00000409809 NCLNQ969V3 563 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 NDEL1Q9GZM8 345 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 SMYD3Q9H7B4 428 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 FGGP02679 453 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 DPCR1Q3MIW9 517 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 ABCC4O15439 1325 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 PNMA8CA0A1B0GUJ8 204 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 HNRNPH1P31943 449 aaKnown RBP13.75□□□□□ -0.21
COL6A3-206ENST00000409809 TRIM71Q2Q1W2 868 aaKnown RBP13.75□□□□□ -0.21
COL6A3-206ENST00000409809 GPBP1L1Q9HC44 474 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-206ENST00000409809 CFLARO15519 480 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 ROPN1BQ9BZX4 212 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-206ENST00000409809 RMI1Q9H9A7 625 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 ROPN1Q9HAT0 212 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-206ENST00000409809 NRBP1Q9UHY1 535 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 APOL4Q9BPW4 351 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 MRPL1Q9BYD6 325 aaKnown RBP13.75□□□□□ -0.21
COL6A3-206ENST00000409809 DLGAP2Q9P1A6 1054 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 MYH8P13535 1937 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 CBFA2T3O75081 653 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 HLA-DPA1P20036 260 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 NOS1P29475 1434 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 TTKP33981 857 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 TRIM67Q6ZTA4 783 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 TTC16Q8NEE8 873 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 TADA1Q96BN2 335 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 ZBTB9Q96C00 473 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 CEP72Q9P209 647 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 TBK1Q9UHD2 729 aa13.75□□□□□ -0.21
COL6A3-206ENST00000409809 NR5A1Q13285 461 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 RHBDL2Q9NX52 303 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 ZNF513Q8N8E2 541 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-206ENST00000409809 SLC26A7Q8TE54 656 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 TMEM206Q9H813 350 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 MROH5Q6ZUA9 1318 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 LIN7AO14910 233 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-206ENST00000409809 CAAP1Q9H8G2 361 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 ZC3H12BQ5HYM0 836 aaKnown RBP13.74□□□□□ -0.21
COL6A3-206ENST00000409809 CHST3Q7LGC8 479 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 RIN3Q8TB24 985 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 NOD2Q9HC29 1040 aa13.74□□□□□ -0.21
COL6A3-206ENST00000409809 UBA2Q9UBT2 640 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-206ENST00000409809 THOC5Q13769 683 aaKnown RBP13.74□□□□□ -0.21
COL6A3-206ENST00000409809 TTBK2Q6IQ55 1244 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms