RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 RC3H1Q5TC82 1133 aaKnown RBP6.53□□□□□ -1.36
SCN1A-203ENST00000409050 PATL1Q86TB9 770 aaKnown RBP6.53□□□□□ -1.36
SCN1A-203ENST00000409050 ATP11CQ8NB49 1132 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 CXorf38Q8TB03 319 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 OSBPL9Q96SU4 736 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 PSMB7Q99436 277 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 SH3GL3Q99963 347 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 GOLPH3LQ9H4A5 285 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 DISC1Q9NRI5 854 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 PKD2L1Q9P0L9 805 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 IP6K2Q9UHH9 426 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 ZNF804BA4D1E1 1349 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 TESPA1A2RU30 521 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-203ENST00000409050 RASSF10A6NK89 507 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 SLC16A3O15427 465 aaKnown RBP6.53□□□□□ -1.36
SCN1A-203ENST00000409050 STAT2P52630 851 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.53□□□□□ -1.36
SCN1A-203ENST00000409050 ITKQ08881 620 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 BYSLQ13895 437 aaKnown RBP6.53□□□□□ -1.36
SCN1A-203ENST00000409050 DIXDC1Q155Q3 683 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 NAALADL2Q58DX5 795 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 FAM173BQ6P4H8 233 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 TRMT10CQ7L0Y3 403 aaKnown RBP6.53□□□□□ -1.36
SCN1A-203ENST00000409050 SIX6OS1Q8N1H7 587 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 DNAAF3Q8N9W5 541 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 ZNF496Q96IT1 587 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-203ENST00000409050 ROPN1BQ9BZX4 212 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-203ENST00000409050 EPC1Q9H2F5 836 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 ROPN1Q9HAT0 212 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-203ENST00000409050 KCND2Q9NZV8 630 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 WDR35Q9P2L0 1181 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 NOVA2Q9UNW9 492 aaKnown RBP6.53□□□□□ -1.36
SCN1A-203ENST00000409050 L3MBTL1Q9Y468 752 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 CLIC4Q9Y696 253 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 SPATA31E1Q6ZUB1 1445 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 LRRIQ4A6NIV6 560 aa6.52□□□□□ -1.36
SCN1A-203ENST00000409050 NVLO15381 856 aaKnown RBP6.52□□□□□ -1.36
SCN1A-203ENST00000409050 PRDM1O75626 825 aa6.52□□□□□ -1.36
SCN1A-203ENST00000409050 GNAT1P11488 350 aa6.52□□□□□ -1.36
SCN1A-203ENST00000409050 PTH1RQ03431 593 aa6.52□□□□□ -1.36
SCN1A-203ENST00000409050 POLA2Q14181 598 aa6.52□□□□□ -1.36
SCN1A-203ENST00000409050 USH1GQ495M9 461 aa6.52□□□□□ -1.36
SCN1A-203ENST00000409050 CCDC92Q53HC0 331 aaPredicted RBP6.52□□□□□ -1.36
SCN1A-203ENST00000409050 AGBL2Q5U5Z8 902 aa6.52□□□□□ -1.36
SCN1A-203ENST00000409050 SPOPLQ6IQ16 392 aa6.52□□□□□ -1.36
SCN1A-203ENST00000409050 APBB2Q92870 758 aa6.52□□□□□ -1.36
SCN1A-203ENST00000409050 ACSBG1Q96GR2 724 aa6.52□□□□□ -1.36
SCN1A-203ENST00000409050 SGSM3Q96HU1 749 aa6.52□□□□□ -1.36
SCN1A-203ENST00000409050 TOPORSQ9NS56 1045 aaPredicted RBP6.52□□□□□ -1.36
SCN1A-203ENST00000409050 SEPT3Q9UH03 358 aa6.52□□□□□ -1.36
SCN1A-203ENST00000409050 STAP1Q9ULZ2 295 aa6.52□□□□□ -1.36
SCN1A-203ENST00000409050 ZRANB2O95218 330 aaKnown RBP eCLIP6.52□□□□□ -1.37
SCN1A-203ENST00000409050 KRT76Q01546 638 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 UGP2Q16851 508 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 BSPRYQ5W0U4 402 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 CLEC4GQ6UXB4 293 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 GUF1Q8N442 669 aaKnown RBP6.52□□□□□ -1.37
SCN1A-203ENST00000409050 SMCR8Q8TEV9 937 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-203ENST00000409050 THOC1Q96FV9 657 aaKnown RBP6.52□□□□□ -1.37
SCN1A-203ENST00000409050 PAGE5Q96GU1 130 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 NBPF3Q9H094 633 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 MORC2Q9Y6X9 1032 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-203ENST00000409050 BMP3P12645 472 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 ADD1P35611 737 aaKnown RBP6.52□□□□□ -1.37
SCN1A-203ENST00000409050 AARSP49588 968 aaKnown RBP eCLIP6.52□□□□□ -1.37
SCN1A-203ENST00000409050 GOLGA8FQ08AF8 430 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 GOLGA8DPQ0D2H9 430 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 TSGA10IPQ3SY00 556 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 TTBK2Q6IQ55 1244 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 TRIM67Q6ZTA4 783 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 TNIP2Q8NFZ5 429 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 GCNAQ96QF7 691 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.52□□□□□ -1.373e-8■□□□□ 9.3
SCN1A-203ENST00000409050 AP5M1Q9H0R1 490 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 PYCARDQ9ULZ3 195 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 SPDYE16A6NNV3 312 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-203ENST00000409050 MYO1DO94832 1006 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 PLA2G4BP0C869 781 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 ALAS1P13196 640 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 RCN2Q14257 317 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 MORF4L2Q15014 288 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 SPDYE2Q495Y8 402 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 ERICH1Q86X53 443 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 TTC8Q8TAM2 541 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 HPS3Q969F9 1004 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 DDX50Q9BQ39 737 aaKnown RBP6.52□□□□□ -1.37
SCN1A-203ENST00000409050 TAF1DQ9H5J8 278 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-203ENST00000409050 ZFP69BQ9UJL9 534 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 SUGT1Q9Y2Z0 365 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 ABCB11O95342 1321 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 SSU72P8A0A1W2PR75 194 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 DDX39AO00148 427 aaKnown RBP6.52□□□□□ -1.37
SCN1A-203ENST00000409050 SYF2O95926 243 aaKnown RBP6.52□□□□□ -1.37
SCN1A-203ENST00000409050 IL10P22301 178 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 COPS2P61201 443 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 INPP5AQ14642 412 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 SYDE2Q5VT97 1194 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 CC2D1AQ6P1N0 951 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-203ENST00000409050 KCNV1Q6PIU1 500 aa6.52□□□□□ -1.37
SCN1A-203ENST00000409050 DNAJC10Q8IXB1 793 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms