RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 PNMA5Q96PV4 448 aa32.8■■■□□ 2.84
USP42-202ENST00000404008 NACC1Q96RE7 527 aa32.8■■■□□ 2.84
USP42-202ENST00000404008 DDX19AQ9NUU7 478 aaKnown RBP32.8■■■□□ 2.84
USP42-202ENST00000404008 DCDC2CA8MYV0 355 aa32.79■■■□□ 2.84
USP42-202ENST00000404008 TLR3O15455 904 aaKnown RBP32.79■■■□□ 2.84
USP42-202ENST00000404008 XRCC6P12956 609 aaKnown RBP eCLIP32.79■■■□□ 2.84
USP42-202ENST00000404008 GRB10Q13322 594 aa32.79■■■□□ 2.84
USP42-202ENST00000404008 ANKEF1Q9NU02 776 aa32.79■■■□□ 2.84
USP42-202ENST00000404008 TUBE1Q9UJT0 475 aa32.79■■■□□ 2.84
USP42-202ENST00000404008 A0A087WWV3 80 aa32.78■■■□□ 2.84
USP42-202ENST00000404008 MBLAC1A4D2B0 266 aaPredicted RBP32.78■■■□□ 2.84
USP42-202ENST00000404008 TREHO43280 583 aa32.78■■■□□ 2.84
USP42-202ENST00000404008 FAAP100Q0VG06 881 aa32.78■■■□□ 2.84
USP42-202ENST00000404008 ZRSR1Q15695 479 aaKnown RBP32.78■■■□□ 2.84
USP42-202ENST00000404008 MTERF2Q49AM1 385 aa32.78■■■□□ 2.84
USP42-202ENST00000404008 SHC4Q6S5L8 630 aa32.78■■■□□ 2.84
USP42-202ENST00000404008 CALML4Q96GE6 196 aa32.78■■■□□ 2.84
USP42-202ENST00000404008 CEP89Q96ST8 783 aa32.78■■■□□ 2.84
USP42-202ENST00000404008 SH2D3AQ9BRG2 576 aa32.78■■■□□ 2.84
USP42-202ENST00000404008 NT5C3AQ9H0P0 336 aa32.78■■■□□ 2.84
USP42-202ENST00000404008 CYP26B1Q9NR63 512 aa32.78■■■□□ 2.84
USP42-202ENST00000404008 NPEPPSP55786 919 aa32.77■■■□□ 2.84
USP42-202ENST00000404008 KARSQ15046 597 aaKnown RBP32.77■■■□□ 2.84
USP42-202ENST00000404008 TMEM119Q4V9L6 283 aa32.77■■■□□ 2.84
USP42-202ENST00000404008 CDK5RAP3Q96JB5 506 aa32.77■■■□□ 2.84
USP42-202ENST00000404008 DBR1Q9UK59 544 aaKnown RBP32.77■■■□□ 2.84
USP42-202ENST00000404008 TXLNAP40222 546 aa32.76■■■□□ 2.83
USP42-202ENST00000404008 MTHFD1LQ6UB35 978 aa32.76■■■□□ 2.83
USP42-202ENST00000404008 KCTD17Q8N5Z5 321 aa32.76■■■□□ 2.83
USP42-202ENST00000404008 ZBTB10Q96DT7 871 aa32.76■■■□□ 2.83
USP42-202ENST00000404008 CEP170P1Q96L14 293 aa32.76■■■□□ 2.83
USP42-202ENST00000404008 NOD1Q9Y239 953 aa32.76■■■□□ 2.83
USP42-202ENST00000404008 EVPLQ92817 2033 aa32.76■■■□□ 2.83
USP42-202ENST00000404008 C22orf31O95567 290 aa32.75■■■□□ 2.83
USP42-202ENST00000404008 XKR9Q5GH70 373 aa32.75■■■□□ 2.83
USP42-202ENST00000404008 ADALQ6DHV7 355 aa32.75■■■□□ 2.83
USP42-202ENST00000404008 KCNK18Q7Z418 384 aa32.75■■■□□ 2.83
USP42-202ENST00000404008 SERINC5Q86VE9 423 aa32.75■■■□□ 2.83
USP42-202ENST00000404008 PLIN2Q99541 437 aa32.75■■■□□ 2.83
USP42-202ENST00000404008 PPME1Q9Y570 386 aa32.75■■■□□ 2.83
USP42-202ENST00000404008 CLTBP09497 229 aa32.74■■■□□ 2.83
USP42-202ENST00000404008 KLRC1P26715 233 aa32.74■■■□□ 2.83
USP42-202ENST00000404008 RARRES1P49788 294 aa32.74■■■□□ 2.83
USP42-202ENST00000404008 RESP18Q5W5W9 173 aa32.74■■■□□ 2.83
USP42-202ENST00000404008 RASSF8Q8NHQ8 419 aa32.74■■■□□ 2.83
USP42-202ENST00000404008 DNM3Q9UQ16 869 aa32.74■■■□□ 2.83
USP42-202ENST00000404008 E9PMD0 336 aa32.73■■■□□ 2.83
USP42-202ENST00000404008 PLCG1P19174 1290 aa32.73■■■□□ 2.83
USP42-202ENST00000404008 PTK7Q13308 1070 aa32.73■■■□□ 2.83
USP42-202ENST00000404008 CCDC39Q9UFE4 941 aa32.73■■■□□ 2.83
USP42-202ENST00000404008 PCDHA2Q9Y5H9 948 aa32.73■■■□□ 2.83
USP42-202ENST00000404008 MAGEB2O15479 319 aa32.72■■■□□ 2.83
USP42-202ENST00000404008 CYP2C9P11712 490 aa32.72■■■□□ 2.83
USP42-202ENST00000404008 TBC1D8BQ0IIM8 1120 aa32.72■■■□□ 2.83
USP42-202ENST00000404008 RUFY4Q6ZNE9 571 aa32.72■■■□□ 2.83
USP42-202ENST00000404008 CCDC43Q96MW1 224 aaKnown RBP32.72■■■□□ 2.83
USP42-202ENST00000404008 PDLIM7Q9NR12 457 aa32.72■■■□□ 2.83
USP42-202ENST00000404008 TBX21Q9UL17 535 aa32.72■■■□□ 2.83
USP42-202ENST00000404008 EVI5O60447 810 aa32.71■■■□□ 2.83
USP42-202ENST00000404008 EYA4O95677 639 aa32.71■■■□□ 2.83
USP42-202ENST00000404008 C7orf61Q8IZ16 206 aa32.71■■■□□ 2.83
USP42-202ENST00000404008 LRRC15Q8TF66 581 aa32.71■■■□□ 2.83
USP42-202ENST00000404008 DHX38Q92620 1227 aaKnown RBP32.71■■■□□ 2.83
USP42-202ENST00000404008 DPF3Q92784 378 aa32.71■■■□□ 2.83
USP42-202ENST00000404008 WNT8BQ93098 351 aa32.71■■■□□ 2.83
USP42-202ENST00000404008 BHMT2Q9H2M3 363 aa32.71■■■□□ 2.83
USP42-202ENST00000404008 MAFO75444 373 aaPredicted RBP32.7■■■□□ 2.83
USP42-202ENST00000404008 CMA1P23946 247 aa32.7■■■□□ 2.83
USP42-202ENST00000404008 TAF2Q6P1X5 1199 aa32.7■■■□□ 2.83
USP42-202ENST00000404008 CLEC17AQ6ZS10 378 aa32.7■■■□□ 2.83
USP42-202ENST00000404008 DHX33Q9H6R0 707 aaKnown RBP32.7■■■□□ 2.83
USP42-202ENST00000404008 TMEM39AQ9NV64 488 aa32.7■■■□□ 2.83
USP42-202ENST00000404008 A0A087X0B3 334 aa32.7■■■□□ 2.82
USP42-202ENST00000404008 IGKV6-21A0A0C4DH24 114 aa32.7■■■□□ 2.82
USP42-202ENST00000404008 SMIM35A0A1B0GVV1 85 aa32.7■■■□□ 2.82
USP42-202ENST00000404008 RFC5P40937 340 aa32.7■■■□□ 2.82
USP42-202ENST00000404008 CSPP1Q1MSJ5 1256 aa32.7■■■□□ 2.82
USP42-202ENST00000404008 SH3RF1Q7Z6J0 888 aa32.7■■■□□ 2.82
USP42-202ENST00000404008 BLOC1S4Q9NUP1 217 aa32.7■■■□□ 2.82
USP42-202ENST00000404008 FAM13BQ9NYF5 915 aa32.7■■■□□ 2.82
USP42-202ENST00000404008 TANC1Q9C0D5 1861 aa32.69■■■□□ 2.82
USP42-202ENST00000404008 A0A1W2PQ27 194 aa32.69■■■□□ 2.82
USP42-202ENST00000404008 A0A1W2PQ64 194 aa32.69■■■□□ 2.82
USP42-202ENST00000404008 A0A1W2PQD8 194 aa32.69■■■□□ 2.82
USP42-202ENST00000404008 ARHGEF35A5YM69 484 aa32.69■■■□□ 2.82
USP42-202ENST00000404008 POLGP54098 1239 aaPredicted RBP32.69■■■□□ 2.82
USP42-202ENST00000404008 TRIM71Q2Q1W2 868 aaKnown RBP32.69■■■□□ 2.82
USP42-202ENST00000404008 RRAGBQ5VZM2 374 aa32.69■■■□□ 2.82
USP42-202ENST00000404008 EXOC8Q8IYI6 725 aa32.69■■■□□ 2.82
USP42-202ENST00000404008 LINC01465Q8N7H1 131 aa32.69■■■□□ 2.82
USP42-202ENST00000404008 RETREG2Q8NC44 543 aa32.69■■■□□ 2.82
USP42-202ENST00000404008 SLC7A3Q8WY07 619 aa32.69■■■□□ 2.82
USP42-202ENST00000404008 KIAA0355O15063 1070 aa32.68■■■□□ 2.82
USP42-202ENST00000404008 EFCAB12Q6NXP0 572 aa32.68■■■□□ 2.82
USP42-202ENST00000404008 CCDC73Q6ZRK6 1079 aa32.68■■■□□ 2.82
USP42-202ENST00000404008 METTL13Q8N6R0 699 aa32.68■■■□□ 2.82
USP42-202ENST00000404008 TMEM87AQ8NBN3 555 aa32.68■■■□□ 2.82
USP42-202ENST00000404008 JPH2Q9BR39 696 aaPredicted RBP32.68■■■□□ 2.82
USP42-202ENST00000404008 NOC4LQ9BVI4 516 aaKnown RBP32.68■■■□□ 2.82
USP42-202ENST00000404008 PANK2Q9BZ23 570 aa32.68■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms