RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 SUN1O94901 812 aa19.6■□□□□ 0.73
COL18A1-204ENST00000400337 ZWINTO95229 277 aa19.6■□□□□ 0.73
COL18A1-204ENST00000400337 FGGP02679 453 aa19.6■□□□□ 0.73
COL18A1-204ENST00000400337 SLC27A3Q5K4L6 730 aa19.6■□□□□ 0.73
COL18A1-204ENST00000400337 RAPH1Q70E73 1250 aa19.6■□□□□ 0.73
COL18A1-204ENST00000400337 TBK1Q9UHD2 729 aa19.6■□□□□ 0.73
COL18A1-204ENST00000400337 IPO11Q9UI26 975 aaKnown RBP19.6■□□□□ 0.73
COL18A1-204ENST00000400337 LDHAP00338 332 aaKnown RBP19.6■□□□□ 0.73
COL18A1-204ENST00000400337 MSH2P43246 934 aa19.6■□□□□ 0.73
COL18A1-204ENST00000400337 ABCB6Q9NP58 842 aa19.6■□□□□ 0.73
COL18A1-204ENST00000400337 SLC16A4O15374 487 aa19.59■□□□□ 0.73
COL18A1-204ENST00000400337 SPP2Q13103 211 aa19.59■□□□□ 0.73
COL18A1-204ENST00000400337 RNF146Q9NTX7 359 aa19.59■□□□□ 0.73
COL18A1-204ENST00000400337 PALMO75781 387 aa19.59■□□□□ 0.73
COL18A1-204ENST00000400337 RWDD2BP57060 319 aa19.59■□□□□ 0.73
COL18A1-204ENST00000400337 BIRC2Q13490 618 aa19.59■□□□□ 0.73
COL18A1-204ENST00000400337 C12orf60Q5U649 245 aa19.59■□□□□ 0.73
COL18A1-204ENST00000400337 ERICH1Q86X53 443 aa19.59■□□□□ 0.73
COL18A1-204ENST00000400337 SP8Q8IXZ3 490 aa19.59■□□□□ 0.73
COL18A1-204ENST00000400337 SIX6OS1Q8N1H7 587 aa19.59■□□□□ 0.73
COL18A1-204ENST00000400337 SRBD1Q8N5C6 995 aaKnown RBP19.59■□□□□ 0.73
COL18A1-204ENST00000400337 PLCB4Q15147 1175 aa19.59■□□□□ 0.73
COL18A1-204ENST00000400337 ARHGEF18Q6ZSZ5 1173 aa19.59■□□□□ 0.73
COL18A1-204ENST00000400337 FMO2Q99518 471 aa19.59■□□□□ 0.73
COL18A1-204ENST00000400337 SETBP1Q9Y6X0 1596 aa19.59■□□□□ 0.73
COL18A1-204ENST00000400337 HIP1RO75146 1068 aa19.59■□□□□ 0.73
COL18A1-204ENST00000400337 CLTAP09496 248 aa19.59■□□□□ 0.73
COL18A1-204ENST00000400337 NSUN6Q8TEA1 469 aaKnown RBP19.59■□□□□ 0.73
COL18A1-204ENST00000400337 CASQ2O14958 399 aaPredicted RBP19.58■□□□□ 0.73
COL18A1-204ENST00000400337 CLDN3O15551 220 aa19.58■□□□□ 0.73
COL18A1-204ENST00000400337 IFT88Q13099 833 aa19.58■□□□□ 0.73
COL18A1-204ENST00000400337 ORC2Q13416 577 aaPredicted RBP19.58■□□□□ 0.73
COL18A1-204ENST00000400337 NNTQ13423 1086 aa19.58■□□□□ 0.73
COL18A1-204ENST00000400337 CCDC144BQ3MJ40 725 aa19.58■□□□□ 0.73
COL18A1-204ENST00000400337 CCDC197Q8NCU1 140 aa19.58■□□□□ 0.73
COL18A1-204ENST00000400337 PNMA3Q9UL41 463 aa19.58■□□□□ 0.73
COL18A1-204ENST00000400337 USP42Q9H9J4 1324 aaKnown RBP19.58■□□□□ 0.73
COL18A1-204ENST00000400337 CASP8Q14790 479 aa19.58■□□□□ 0.73
COL18A1-204ENST00000400337 KNOP1Q1ED39 458 aaKnown RBP19.58■□□□□ 0.73
COL18A1-204ENST00000400337 TCP11Q8WWU5 503 aa19.58■□□□□ 0.73
COL18A1-204ENST00000400337 ZNF609O15014 1411 aa19.58■□□□□ 0.73
COL18A1-204ENST00000400337 SRGAP2O75044 1071 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 SRGAP2BP0DMP2 458 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 ARPP19P56211 112 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 ATP2C1P98194 919 aaPredicted RBP19.58■□□□□ 0.72
COL18A1-204ENST00000400337 SLMAPQ14BN4 828 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 SH2D4BQ5SQS7 431 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 NEK9Q8TD19 979 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 KRT76Q01546 638 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 MAP7Q14244 749 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 ZNF667Q5HYK9 610 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 FBXO40Q9UH90 709 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 LRFN2Q9ULH4 789 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 TEX33O43247 280 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 CTNND1O60716 968 aaKnown RBP19.58■□□□□ 0.72
COL18A1-204ENST00000400337 CATSPER4Q7RTX7 472 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 BBS5Q8N3I7 341 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 DCLK2Q8N568 766 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 CFAP61Q8NHU2 1237 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 WHAMMQ8TF30 809 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 NFU1Q9UMS0 254 aa19.58■□□□□ 0.72
COL18A1-204ENST00000400337 BAG2O95816 211 aa19.57■□□□□ 0.72
COL18A1-204ENST00000400337 GFPT1Q06210 699 aaPredicted RBP19.57■□□□□ 0.72
COL18A1-204ENST00000400337 CDO1Q16878 200 aa19.57■□□□□ 0.72
COL18A1-204ENST00000400337 FBXO38Q6PIJ6 1188 aa19.57■□□□□ 0.72
COL18A1-204ENST00000400337 GJD4Q96KN9 370 aaPredicted RBP19.57■□□□□ 0.72
COL18A1-204ENST00000400337 CCHCR1Q8TD31 782 aa19.57■□□□□ 0.72
COL18A1-204ENST00000400337 ZWILCHQ9H900 591 aa19.57■□□□□ 0.72
COL18A1-204ENST00000400337 ZBTB7AO95365 584 aa19.57■□□□□ 0.72
COL18A1-204ENST00000400337 MUM1Q2TAK8 710 aa19.57■□□□□ 0.72
COL18A1-204ENST00000400337 PHLDB3Q6NSJ2 640 aa19.57■□□□□ 0.72
COL18A1-204ENST00000400337 ZNF18P17022 549 aa19.57■□□□□ 0.72
COL18A1-204ENST00000400337 ARHGEF6Q15052 776 aa19.57■□□□□ 0.72
COL18A1-204ENST00000400337 MAP3K21Q5TCX8 1036 aa19.57■□□□□ 0.72
COL18A1-204ENST00000400337 DHX40Q8IX18 779 aaKnown RBP19.57■□□□□ 0.72
COL18A1-204ENST00000400337 MCUQ8NE86 351 aa19.57■□□□□ 0.72
COL18A1-204ENST00000400337 OR6B3Q8NGW1 331 aa19.57■□□□□ 0.72
COL18A1-204ENST00000400337 SKA2Q8WVK7 121 aaPredicted RBP19.57■□□□□ 0.72
COL18A1-204ENST00000400337 FAM213AQ9BRX8 229 aa19.57■□□□□ 0.72
COL18A1-204ENST00000400337 DNAJC17Q9NVM6 304 aaKnown RBP19.57■□□□□ 0.72
COL18A1-204ENST00000400337 ADAM22Q9P0K1 906 aa19.57■□□□□ 0.72
COL18A1-204ENST00000400337 SCINQ9Y6U3 715 aa19.57■□□□□ 0.72
COL18A1-204ENST00000400337 EP400NLQ6ZTU2 488 aa19.56■□□□□ 0.72
COL18A1-204ENST00000400337 NOVA2Q9UNW9 492 aaKnown RBP19.56■□□□□ 0.72
COL18A1-204ENST00000400337 C1orf167Q5SNV9 1468 aa19.56■□□□□ 0.72
COL18A1-204ENST00000400337 ARHGEF40Q8TER5 1519 aa19.56■□□□□ 0.72
COL18A1-204ENST00000400337 P4HBP07237 508 aaKnown RBP19.56■□□□□ 0.72
COL18A1-204ENST00000400337 QARSP47897 775 aaKnown RBP19.56■□□□□ 0.72
COL18A1-204ENST00000400337 MAPK6Q16659 721 aa19.56■□□□□ 0.72
COL18A1-204ENST00000400337 BBS9Q3SYG4 887 aa19.56■□□□□ 0.72
COL18A1-204ENST00000400337 MUM1L1Q5H9M0 696 aa19.56■□□□□ 0.72
COL18A1-204ENST00000400337 HDAC11Q96DB2 347 aa19.56■□□□□ 0.72
COL18A1-204ENST00000400337 CNOT8Q9UFF9 292 aaKnown RBP19.56■□□□□ 0.72
COL18A1-204ENST00000400337 ANAPC7Q9UJX3 599 aa19.56■□□□□ 0.72
COL18A1-204ENST00000400337 DENND3A2RUS2 1198 aa19.56■□□□□ 0.72
COL18A1-204ENST00000400337 RASGRF2O14827 1237 aa19.56■□□□□ 0.72
COL18A1-204ENST00000400337 NFX1Q12986 1120 aaKnown RBP19.56■□□□□ 0.72
COL18A1-204ENST00000400337 ARMCX2Q7L311 632 aa19.56■□□□□ 0.72
COL18A1-204ENST00000400337 PRPF38AQ8NAV1 312 aaKnown RBP19.56■□□□□ 0.72
COL18A1-204ENST00000400337 IPO5O00410 1097 aaKnown RBP19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms